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[171928_x_at]

Description AV180531_rc /REP_DB=TREMBL Accession /GB=AV180531 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk608f4 : 3prime end, single read.
Cluster 6grp_total > 33      4grp_total > 09      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 100
1 2 3 4 range
A 34.4
(-3)
A 		102.6
(3)
A 		50.3
(-1.6)
A 		94
(2.2)
A 		68
B 46.1
(2.9)
A 		14.5
(-3)
A 		46.9
(3)
A 		44.9
(2.6)
A 		32
C 33.2
(0.2)
A 		2.3
(-3)
A 		34.4
(0.3)
A 		61.1
(3)
A 		59
avr 37.9
(-3) 		39.8
(-2.6) 		43.9
(-1.8) 		66.7
(3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 46.9
(-0)
A 		32.7
(-1.6)
A 		74.4
(3)
A 		35.4
(-1.3)
A 		20.1
(-3)
A 		46.4
(-0.1)
A 		54
B 52.8
(0.5)
A 		60.9
(2.6)
M 		62.5
(3)
A 		39
(-3)
A 		51.5
(0.2)
A 		57.6
(1.7)
A 		24
C 62.2
(3)
A 		61.2
(2.9)
M 		53.7
(2.1)
A 		58
(2.6)
A 		7.3
(-2.8)
A 		5.3
(-3)
A 		57
avr 54
(1.5) 		51.6
(1.1) 		63.5
(3) 		44.1
(-0.1) 		26.3
(-3) 		36.4
(-1.4) 		37
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 12.5
(-3)
A 		22.3
(3)
A 		13.2
(-2.6)
A 		13.8
(-2.2)
A 		10
B 14.7
(3)
A 		3.6
(-3)
A 		10.9
(0.9)
A 		9.6
(0.2)
A 		11
C 11
(2.5)
A 		0.6
(-3)
A 		12
(3)
A 		10.3
(2.1)
A 		11
avr 12.7
(3) 		8.8
(-3) 		12
(1.9) 		11.2
(0.7) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 8.7
(-1.5)
A 		11.6
(0.3)
A 		16.2
(3)
A 		9
(-1.3)
A 		6.1
(-3)
A 		11.3
(0.1)
A 		10
B 18.4
(1.3)
A 		20.3
(2.4)
M 		15.2
(-0.4)
A 		10.3
(-3)
A 		20.9
(2.7)
A 		21.5
(3)
A 		11
C 23.1
(3)
A 		18.7
(1.8)
M 		13.7
(0.4)
A 		11.7
(-0.2)
A 		2.4
(-2.8)
A 		1.8
(-3)
A 		21
avr 16.7
(2.8) 		16.9
(3) 		15
(1.4) 		10.3
(-2.6) 		9.8
(-3) 		11.5
(-1.6) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171928_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27904
Sequence Type Exemplar sequence
Representative Public ID AV180531 NCBI
Target Description AV180531_rc /REP_DB=TREMBL Accession /GB=AV180531 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk608f4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070129
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000017208 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13150678:13154299:-1 None
NM_070129 NCBI Caenorhabditis elegans F09E8.2 (F09E8.2) mRNA, complete cds. A 
F09E8.2 ENSEMBL cdna:known chromosome:CEL140:IV:13150866:13154418:-1 gene:F09E8.2 A 
SNAP00000017198 ENSEMBL cdna:SNAP chromosome:CEL140:IV:13150678:13154299:-1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13150617-13152102(-) 92.03 92.03
Public Domain and Genome References
Gene Title
Ensembl F09E8.2
Entrez Gene 178267 Entrez gene
SwissProt Q19267 EMBL-EBI
WormBase CE05579 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1599655_S_AT similar to cysteine-rich with EGF-like domains 1 isoform 2 cfa
CANINE_2:CFA.20559.1.S1_S_AT similar to cysteine-rich with EGF-like domains 1 isoform 2 cfa
CANINE_2:CFA.2900.1.A1_AT similar to cysteine-rich with EGF-like domains 1 isoform 2 cfa
DROSGENOME1:145510_AT dm
DROSOPHILA_2:1633661_AT dm
HG-U95AV2:39115_AT cysteine-rich with EGF-like domains 1 hs
HU35KSUBA:RC_AA424398_AT cysteine-rich with EGF-like domains 1 hs
HG-U133A:203368_AT cysteine-rich with EGF-like domains 1 hs
HG-U133_PLUS_2:203368_AT cysteine-rich with EGF-like domains 1 hs
HG-U133A_2:203368_AT cysteine-rich with EGF-like domains 1 hs
U133_X3P:G7661643_3P_AT cysteine-rich with EGF-like domains 1 hs
MG-U74BV2:113172_AT cysteine-rich with EGF-like domains 1 mm
MOE430A:1416537_AT cysteine-rich with EGF-like domains 1 mm
MOUSE430A_2:1416537_AT cysteine-rich with EGF-like domains 1 mm
MOUSE430_2:1416537_AT cysteine-rich with EGF-like domains 1 mm
MU19KSUBC:TC37680_AT Cysteine-rich with EGF-like domains 1, mRNA (cDNA clone MGC:36401 IMAGE:5310111) mm
MU19KSUBC:TC40930_AT Cysteine-rich with EGF-like domains 1, mRNA (cDNA clone MGC:36401 IMAGE:5310111) mm
RG-U34C:RC_AI175044_AT cysteine-rich with EGF-like domains 1 (predicted) rn
RAE230A:1388594_AT cysteine-rich with EGF-like domains 1 (predicted) rn
RAT230_2:1388594_AT cysteine-rich with EGF-like domains 1 (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5198 structural molecule activity inferred from electronic annotation QuickGO AmiGO
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
5509 calcium ion binding inferred from electronic annotation QuickGO AmiGO
20037 heme binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA98055 Hypothetical protein F09E8.2 [Caenorhabditis elegans] ref|NP_502530.1| F09E8.2 [Caenorhabditis elegans] 0.0
blast CAE58648 Hypothetical protein CBG01816 [Caenorhabditis briggsae] 1.0E-178
blast CAA98055 Hypothetical protein F09E8.2 [Caenorhabditis elegans] ref|NP_502530.1| F09E8.2 [Caenorhabditis elegans] 1.0E-167
blast CAE58648 Hypothetical protein CBG01816 [Caenorhabditis briggsae] 1.0E-140
blast CAI20713 novel protein similar to vertebrate cysteine-rich with EGF-like domains 1 (CRELD1) (zgc:66383) [Danio rerio] 2.0E-56
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502530.1 2 300-317,322-341
F09E8.2 2 300-317,322-341
Sequence
Target Sequence 
>C. ELEGANS:171928_X_AT
agaagaagggtgcgcagacgtctacgaatgccaaaacgagtccgcatncacaaaagagca
cgaaatttgtgtgaacactgtcggatctttcaagtgtgaatgtaaggaaggatataagaa
ggatgatgagcaaaattgtcnatttgacgtcgaagccctgaaagcaacggaacancaagc
tcatgaagatgaggatggagacgatgacgatgagaaggatg

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAAGAAGGGTGCGCAGACGTCTAC 393 73 19 Antisense
GTGCGCAGACGTCTACGAATGCCAA 229 479 28 Antisense
GTCTACGAATGCCAAAACGAGTCCG 334 459 38 Antisense
AGAGCACGAAATTTGTGTGAACACT 132 69 73 Antisense
GTGTGAACACTGTCGGATCTTTCAA 686 487 87 Antisense
ACTGTCGGATCTTTCAAGTGTGAAT 351 97 95 Antisense
ATTTGACGTCGAAGCCCTGAAAGCA 81 19 160 Antisense
GACGTCGAAGCCCTGAAAGCAACGG 583 377 164 Antisense
TCGAAGCCCTGAAAGCAACGGAACA 454 599 168 Antisense
AGATGAGGATGGAGACGATGACGAT 211 67 205 Antisense
GGAGACGATGACGATGAGAAGGATG 168 519 215 Antisense
Sequence Source Affymetrix Proprietary Database