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[171925_x_at]

Description CEK110E2R_rc /REP_DB=TREMBL Accession /GB=D72867 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk110e2 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 05      4grp_highest_8_8 > 24      4grp_high_8_8 > 44      6grp_total > 15      4grp_total > 52      6grp_high1_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 159
1 2 3 4 range
A 213.3
(1.2)
P 		242.7
(2.8)
P 		245.7
(3)
P 		138.9
(-3)
P 		107
B 251.1
(2.1)
P 		269.3
(3)
P 		225.2
(0.8)
P 		151
(-3)
P 		118
C 253.4
(1.1)
P 		298.2
(3)
P 		235.2
(0.3)
P 		160
(-3)
P 		138
avr 239.3
(1.5) 		270.1
(3) 		235.4
(1.3) 		150
(-3) 		120

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 231
1 2 3 4 5 6 range
A 349.4
(3)
P 		292.6
(1.2)
P 		175.9
(-2.4)
P 		206.9
(-1.4)
P 		187.5
(-2)
P 		155.6
(-3)
P 		194
B 345.3
(3)
P 		272.5
(0.8)
P 		190.1
(-1.7)
P 		174.9
(-2.2)
P 		160
(-2.6)
A 		146.9
(-3)
P 		198
C 297.4
(3)
P 		272.1
(2.2)
P 		193.7
(-0.5)
P 		195.4
(-0.4)
P 		206.1
(-0.1)
P 		118.8
(-3)
P 		179
avr 330.7
(3) 		279.1
(1.4) 		186.6
(-1.5) 		192.4
(-1.4) 		184.5
(-1.6) 		140.4
(-3) 		190
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 77.7
(3)
P 		52.7
(0.4)
P 		64.2
(1.6)
P 		20.3
(-3)
P 		57
B 80.1
(3)
P 		66.5
(1.3)
P 		52.2
(-0.5)
P 		32.2
(-3)
P 		48
C 83.9
(2.8)
P 		85.7
(3)
P 		82
(2.6)
P 		27
(-3)
P 		59
avr 80.6
(3) 		68.3
(1.6) 		66.1
(1.4) 		26.5
(-3) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 82
1 2 3 4 5 6 range
A 64.4
(-0.6)
P 		104.1
(3)
P 		38.3
(-3)
P 		52.5
(-1.7)
P 		56.6
(-1.3)
P 		37.9
(-3)
P 		66
B 120.1
(3)
P 		90.7
(0.6)
P 		46.2
(-3)
P 		46.3
(-3)
P 		65
(-1.5)
A 		54.8
(-2.3)
P 		74
C 110.2
(3)
P 		83
(0.7)
P 		49.3
(-2.2)
P 		39.3
(-3)
P 		66.7
(-0.7)
P 		39.8
(-3)
P 		71
avr 98.2
(3) 		92.6
(2.4) 		44.6
(-3) 		46
(-2.8) 		62.8
(-0.9) 		44.2
(-3) 		54
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171925_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27989
Sequence Type Exemplar sequence
Representative Public ID CEK110E2R NCBI
Target Description CEK110E2R_rc /REP_DB=TREMBL Accession /GB=D72867 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk110e2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) CEK110E2R
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
CEK110E2R CEK110E2R_rc /REP_DB=TREMBL Accession /GB=D72867 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk110e2 : 3prime end, single read. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001029304 7/11 Cross Hyb Matching Probes None
NM_001029305 3/11 Cross Hyb Matching Probes None
SNAP00000034186 3/11 Cross Hyb Matching Probes None
C46H3.2a 7/11 Cross Hyb Matching Probes None
C46H3.2b.2 3/11 Cross Hyb Matching Probes A 
C46H3.2b.1 3/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1211836-1212369(-) 72.3 72.3
Sequence
Target Sequence 
>C. ELEGANS:171925_X_AT
atcatgcaagtggatcactcatctgtgggaagctccaacaagcccacaattgacgaaatg
ctccaagacattcagggcgcaatggacaatttgatatcctcataagcacttnnnnngtca
taanttttcgttctctctataggttatagaatannnnngcatnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnaatgatcgaacggttcacctgctttac

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCATGCAAGTGGATCACTCATCTG 1 31 72 Antisense
GGATCACTCATCTGTGGGAAGCTCC 541 511 83 Antisense
TGGGAAGCTCCAACAAGCCCACAAT 166 553 97 Antisense
CTCCAACAAGCCCACAATTGACGAA 528 235 104 Antisense
GCCCACAATTGACGAAATGCTCCAA 554 287 113 Antisense
AATGCTCCAAGACATTCAGGGCGCA 193 167 128 Antisense
TTCAGGGCGCAATGGACAATTTGAT 195 685 142 Antisense
CAATTTGATATCCTCATAAGCACTT 670 179 158 Antisense
TTTTCGTTCTCTCTATAGGTTATAG 378 677 196 Antisense
AATGATCGAACGGTTCACCTGCTTT 50 165 269 Antisense
TGATCGAACGGTTCACCTGCTTTAC 421 565 271 Antisense
Sequence Source Affymetrix Proprietary Database