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[171924_x_at]

Description CEK119D9R_rc /REP_DB=TREMBL Accession /GB=D66615 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk119d9 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 18      6grp_high1_10_10 > 70      4grp_highest_8_8 > 16      4grp_high_8_8 > 52      6grp_highest_nonorm > 26      6grp_total > 82      4grp_total > 59      6grp_highest_sub > 04_05      6grp_cgc > 51      6grp_high1_sub > 04      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7447
1 2 3 4 range
A 5006.6
(0.3)
P 		4106.1
(-0.7)
P 		7529.3
(3)
P 		1928.8
(-3)
P 		5601
B 5358.6
(0.3)
P 		8450
(3)
P 		5194.5
(0.2)
P 		1471.4
(-3)
P 		6979
C 5518.8
(0.6)
P 		8526.4
(3)
P 		8226
(2.8)
P 		1079.5
(-3)
P 		7447
avr 5294.7
(1.1) 		7027.5
(3) 		6983.3
(3) 		1493.2
(-3) 		5534

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4081
1 2 3 4 5 6 range
A 6550.6
(2)
P 		5731.7
(0.6)
P 		6364.4
(1.7)
P 		7110.1
(3)
P 		6767.5
(2.4)
P 		3714.1
(-3)
P 		3396
B 6686.5
(1.3)
P 		6242.1
(0.6)
P 		6425.4
(0.9)
P 		6254.4
(0.6)
P 		7795
(3)
P 		3948.1
(-3)
P 		3847
C 6592.4
(1.4)
P 		5889.2
(-0)
P 		6500.1
(1.2)
P 		7393.5
(3)
P 		6991.9
(2.2)
P 		4425.1
(-3)
P 		2968
avr 6609.8
(1.9) 		5954.3
(0.7) 		6430
(1.6) 		6919.3
(2.5) 		7184.8
(3) 		4029.1
(-3) 		3156
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2685
1 2 3 4 range
A 1822.9
(2.5)
P 		891.3
(-0.8)
P 		1968.3
(3)
P 		282.3
(-3)
P 		1686
B 1708.8
(1.7)
P 		2087
(3)
P 		1203.7
(0)
P 		313.6
(-3)
P 		1773
C 1826.9
(0.7)
P 		2451.4
(2.1)
P 		2867
(3)
P 		182
(-3)
P 		2685
avr 1786.2
(2.2) 		1809.9
(2.3) 		2013
(3) 		259.3
(-3) 		1754

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2263
1 2 3 4 5 6 range
A 1207.6
(-1.4)
P 		2038.5
(3)
P 		1386
(-0.5)
P 		1803.3
(1.7)
P 		2042.1
(3)
P 		904.3
(-3)
P 		1138
B 2326.6
(0)
P 		2077.7
(-0.9)
P 		1560.3
(-2.7)
P 		1656.6
(-2.3)
P 		3167
(3)
P 		1472.2
(-3)
P 		1695
C 2443.5
(3)
P 		1797
(-1)
P 		1654.4
(-1.9)
P 		1486.8
(-3)
P 		2262.5
(1.9)
P 		1481.3
(-3)
P 		962
avr 1992.6
(0.5) 		1971.1
(0.4) 		1533.6
(-1.8) 		1648.9
(-1.2) 		2490.5
(3) 		1285.9
(-3) 		1205
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171924_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27726
Sequence Type Exemplar sequence
Representative Public ID CEK119D9R NCBI
Target Description CEK119D9R_rc /REP_DB=TREMBL Accession /GB=D66615 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk119d9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq,GenBank identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001025923(10), NM_001025922(10), U04711(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001025923 NCBI Caenorhabditis elegans UNCoordinated family member (unc-87) (unc-87) mRNA, complete cds. 10/11 None
NM_001025922 NCBI Caenorhabditis elegans UNCoordinated family member (unc-87) (unc-87) mRNA, complete cds. 10/11 None
U04711 NCBI Caenorhabditis elegans N2 (unc-87) mRNA, complete cds. 10/11 A 
F08B6.4c.3 ENSEMBL cdna:known chromosome:CEL140:I:6769362:6775931:-1 gene:F08B6.4 10/11 A 
F08B6.4c.2 ENSEMBL cdna:known chromosome:CEL140:I:6769362:6773745:-1 gene:F08B6.4 10/11 A 
F08B6.4c.1 ENSEMBL cdna:known chromosome:CEL140:I:6769362:6773846:-1 gene:F08B6.4 10/11 A 
F08B6.4b.1 ENSEMBL cdna:known chromosome:CEL140:I:6769701:6775931:-1 gene:F08B6.4 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001025921 6/11 Cross Hyb Matching Probes None
SNAP00000014331 6/11 Cross Hyb Matching Probes None
GENEFINDER00000014336 3/11 Cross Hyb Matching Probes None
GENEFINDER00000014337 2/11 Cross Hyb Matching Probes None
F08B6.4a 6/11 Cross Hyb Matching Probes A 
F08B6.4b.2 6/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
172397 3 2 NM_001025922 171924_x_at (10)
NM_001025923 171924_x_at (10)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6769642-6769939(-) 73.67 73.67
Public Domain and Genome References
Ensembl F08B6.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAT68897 Uncoordinated protein 87, isoform c [Caenorhabditis elegans] ref|NP_001021094.1| UNCoordinated family member (unc-87) [Caenorhabditis elegans] 0.0
blast AAC78234 Uncoordinated protein 87, isoform a [Caenorhabditis elegans] ref|NP_001021092.1| UNCoordinated family member (unc-87) [Caenorhabditis elegans] pir||T33851 thin filament-associated protein UNC-87, long form - Caenorhabditis elegans gb|AAA81902.1| one of two alternatively spliced products 0.0
blast P37806 Uncoordinated protein 87 (Protein unc-87) 0.0
blast AAK68303 Uncoordinated protein 87, isoform b [Caenorhabditis elegans] ref|NP_001021093.1| UNCoordinated family member (unc-87) [Caenorhabditis elegans] gb|AAA81901.1| uses the first of two potential start codons; second of two alternatively spliced products gb|AAA81899.1| uses first of two potential start sites 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000557 EMBL-EBI Calponin repeat 1.4E-4
Pfam IPR000557 EMBL-EBI Calponin repeat 2.3E-8
Pfam IPR000557 EMBL-EBI Calponin repeat 4.2E-8
Pfam IPR000557 EMBL-EBI Calponin repeat 1.0E-10
Pfam IPR000557 EMBL-EBI Calponin repeat 5.5E-9
Pfam IPR000557 EMBL-EBI Calponin repeat 3.8E-8
Pfam IPR000557 EMBL-EBI Calponin repeat 7.0E-5
Pfam IPR000557 EMBL-EBI Calponin repeat 1.4E-4
Pfam IPR000557 EMBL-EBI Calponin repeat 2.3E-8
Pfam IPR000557 EMBL-EBI Calponin repeat 4.2E-8
Pfam IPR000557 EMBL-EBI Calponin repeat 1.0E-10
Pfam IPR000557 EMBL-EBI Calponin repeat 5.5E-9
Pfam IPR000557 EMBL-EBI Calponin repeat 3.8E-8
Pfam IPR000557 EMBL-EBI Calponin repeat 7.0E-5
Pfam IPR000557 EMBL-EBI Calponin repeat 1.4E-4
Pfam IPR000557 EMBL-EBI Calponin repeat 2.3E-8
Pfam IPR000557 EMBL-EBI Calponin repeat 4.2E-8
Pfam IPR000557 EMBL-EBI Calponin repeat 1.0E-10
Pfam IPR000557 EMBL-EBI Calponin repeat 5.5E-9
Pfam IPR000557 EMBL-EBI Calponin repeat 3.8E-8
Pfam IPR000557 EMBL-EBI Calponin repeat 7.0E-5
Sequence
Target Sequence 
>C. ELEGANS:171924_X_AT
aggtgtctgagaccatcattccaagtcaaagctggatggaacaagggagactcacagaag
aagatgacatcattcggagcaccacgtgacgttaagggcaagcacttgaagagaatctgg
gagcttgaatacccagaagaggctgaaatctctttggatcgtctctaaatcnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnntnacatgatacctgtgcataatttgcttcaacttctt
ctccaaatgtttcttctta

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGGTGTCTGAGACCATCATTCCAAG 52 59 13 Antisense
GACCATCATTCCAAGTCAAAGCTGG 568 383 23 Antisense
GGATGGAACAAGGGAGACTCACAGA 284 515 46 Antisense
AGATGACATCATTCGGAGCACCACG 302 67 74 Antisense
GGAGCACCACGTGACGTTAAGGGCA 432 519 88 Antisense
GGGAGCTTGAATACCCAGAAGAGGC 656 493 131 Antisense
GGCTGAAATCTCTTTGGATCGTCTC 705 539 153 Antisense
AATCTCTTTGGATCGTCTCTAAATC 696 167 159 Antisense
ACATGATACCTGTGCATAATTTGCT 161 105 218 Antisense
TAATTTGCTTCAACTTCTTCTCCAA 324 635 234 Antisense
CTTCTTCTCCAAATGTTTCTTCTTA 397 221 247 Antisense
Sequence Source Affymetrix Proprietary Database