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[171923_x_at] Iron-containing alcohol dehydrogenases

Description CEK073DXR_rc /REP_DB=TREMBL Accession /GB=D66076 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk73d10 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 57      6grp_high1_10_10 > 85      4grp_high_8_8 > 59      6grp_highest_nonorm > 91      6grp_total > 76      4grp_total > 60      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 523
1 2 3 4 range
A 308.3
(1.6)
P 		375
(2.8)
P 		384
(3)
P 		56.6
(-3)
P 		327
B 381.5
(3)
P 		204.1
(0)
P 		380.4
(3)
P 		23.2
(-3)
A 		358
C 263.3
(-0.5)
P 		218.3
(-1.1)
P 		546.3
(3)
P 		65
(-3)
P 		481
avr 317.7
(1.2) 		265.8
(0.4) 		436.9
(3) 		48.3
(-3) 		389

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 174
1 2 3 4 5 6 range
A 162.1
(-3)
P 		176.6
(-1.7)
P 		221.7
(2.4)
P 		225.5
(2.7)
P 		228.9
(3)
P 		207.6
(1.1)
P 		67
B 182.9
(-3)
P 		232.1
(-1.1)
P 		246.2
(-0.5)
P 		220
(-1.5)
P 		258.6
(-0)
P 		335.7
(3)
P 		153
C 214.3
(0.3)
P 		163.6
(-3)
P 		253.3
(2.9)
P 		185.2
(-1.6)
P 		193.8
(-1)
P 		255.1
(3)
P 		92
avr 186.4
(-3) 		190.8
(-2.7) 		240.4
(1.1) 		210.2
(-1.2) 		227.1
(0.1) 		266.1
(3) 		80
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 186
1 2 3 4 range
A 112.2
(3)
P 		81.4
(1.2)
P 		100.4
(2.3)
P 		8.3
(-3)
P 		104
B 121.7
(3)
P 		50.4
(-0.7)
P 		88.1
(1.3)
P 		4.9
(-3)
A 		117
C 87.1
(-0.5)
P 		62.8
(-1.3)
P 		190.4
(3)
P 		11
(-3)
P 		179
avr 107
(2) 		64.9
(-0.1) 		126.3
(3) 		8.1
(-3) 		118

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 95
1 2 3 4 5 6 range
A 29.9
(-3)
P 		62.8
(2)
P 		48.3
(-0.2)
P 		57.2
(1.2)
P 		69.1
(3)
P 		50.5
(0.2)
P 		39
B 63.6
(-2.5)
P 		77.2
(-1.3)
P 		59.8
(-2.9)
P 		58.3
(-3)
P 		105.1
(1.2)
P 		125.2
(3)
P 		67
C 79.4
(2.3)
P 		49.9
(-1.4)
P 		64.5
(0.4)
P 		37.2
(-3)
P 		62.7
(0.2)
P 		85.4
(3)
P 		48
avr 57.6
(-1.9) 		63.3
(-0.9) 		57.5
(-1.9) 		50.9
(-3) 		79
(1.7) 		87
(3) 		36
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171923_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28039
Sequence Type Exemplar sequence
Representative Public ID CEK073DXR NCBI
Target Description CEK073DXR_rc /REP_DB=TREMBL Accession /GB=D66076 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk73d10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064363
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000020293 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12994364:12996089:-1 None
Y38F1A.6.2 ENSEMBL cdna:known chromosome:CEL140:II:12994262:12996464:-1 gene:Y38F1A.6 A 
Y38F1A.6.1 ENSEMBL cdna:known chromosome:CEL140:II:12994262:12996309:-1 gene:Y38F1A.6 A 
SNAP00000020282 ENSEMBL cdna:SNAP chromosome:CEL140:II:12994364:12996089:-1 None
Y38F1A.6.3 ENSEMBL cdna:known chromosome:CEL140:II:12994269:12996511:-1 gene:Y38F1A.6 A 
NM_064363 NCBI Caenorhabditis elegans Y38F1A.6 (Y38F1A.6) mRNA, complete cds. A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12994270-12994633(-) 87.39 87.39
Public Domain and Genome References
Gene Title Iron-containing alcohol dehydrogenases
Ensembl Y38F1A.6
Entrez Gene 174942 Entrez gene
SwissProt Q9U2M4 EMBL-EBI
WormBase CE24222 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1602528_AT similar to alcohol dehydrogenase, iron containing, 1 cfa
CANINE:1593452_AT similar to alcohol dehydrogenase, iron containing, 1 cfa
CANINE_2:CFA.14010.1.A1_AT similar to alcohol dehydrogenase, iron containing, 1 cfa
CANINE_2:CFA.9585.1.A1_AT similar to alcohol dehydrogenase, iron containing, 1 cfa
CANINE_2:CFAAFFX.11851.1.S1_AT similar to alcohol dehydrogenase, iron containing, 1 cfa
DROSOPHILA_2:1628907_AT Type III alcohol dehydrogenase dm
DROSGENOME1:143891_AT Type III alcohol dehydrogenase dm
CHICKEN:GGA.16991.2.S1_A_AT alcohol dehydrogenase, iron containing, 1 gga
HU35KSUBA:R63545_AT alcohol dehydrogenase, iron containing, 1 hs
HU35KSUBB:RC_R92768_AT alcohol dehydrogenase, iron containing, 1 hs
HU35KSUBB:RC_H48457_AT alcohol dehydrogenase, iron containing, 1 hs
U133_X3P:HS.184261.0.A1_3P_AT alcohol dehydrogenase, iron containing, 1 hs
HG-U133_PLUS_2:227113_AT alcohol dehydrogenase, iron containing, 1 hs
HG-U133B:227113_AT alcohol dehydrogenase, iron containing, 1 hs
HG-U95B:44426_AT alcohol dehydrogenase, iron containing, 1 hs
HG-U95B:48601_AT alcohol dehydrogenase, iron containing, 1 hs
HU35KSUBD:RC_N39016_AT Alcohol dehydrogenase, iron containing, 1 hs
MG-U74BV2:108537_AT alcohol dehydrogenase, iron containing, 1 mm
MG-U74CV2:128834_R_AT alcohol dehydrogenase, iron containing, 1 mm
MOE430A:1424392_AT alcohol dehydrogenase, iron containing, 1 mm
MOUSE430A_2:1424392_AT alcohol dehydrogenase, iron containing, 1 mm
MOUSE430_2:1424392_AT alcohol dehydrogenase, iron containing, 1 mm
MOE430A:1424393_S_AT alcohol dehydrogenase, iron containing, 1 mm
MOUSE430A_2:1424393_S_AT alcohol dehydrogenase, iron containing, 1 mm
MOUSE430_2:1424393_S_AT alcohol dehydrogenase, iron containing, 1 mm
MOE430B:1444193_AT alcohol dehydrogenase, iron containing, 1 mm
MOUSE430_2:1444193_AT alcohol dehydrogenase, iron containing, 1 mm
MU19KSUBA:TC16926_AT Alcohol dehydrogenase, iron containing, 1, mRNA (cDNA clone MGC:37234 IMAGE:4972323) mm
MU19KSUBC:TC41391_AT Alcohol dehydrogenase, iron containing, 1, mRNA (cDNA clone MGC:37234 IMAGE:4972323) mm
MU19KSUBC:TC41391_G_AT Alcohol dehydrogenase, iron containing, 1, mRNA (cDNA clone MGC:37234 IMAGE:4972323) mm
RG-U34C:AA848389_AT alcohol dehydrogenase, iron containing, 1 (predicted) rn
RG-U34C:AA942889_AT alcohol dehydrogenase, iron containing, 1 (predicted) rn
RG-U34C:RC_AI072214_AT alcohol dehydrogenase, iron containing, 1 (predicted) rn
RAE230A:1389548_AT alcohol dehydrogenase, iron containing, 1 (predicted) rn
RAT230_2:1389548_AT alcohol dehydrogenase, iron containing, 1 (predicted) rn
RAE230B:1384073_AT alcohol dehydrogenase, iron containing, 1 (predicted) rn
RAT230_2:1384073_AT alcohol dehydrogenase, iron containing, 1 (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5506 iron ion binding inferred from electronic annotation QuickGO AmiGO
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA21631 Hypothetical protein Y38F1A.6 [Caenorhabditis elegans] ref|NP_496764.1| Y38F1A.6 [Caenorhabditis elegans] 0.0
blast CAE59405 Hypothetical protein CBG02769 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001670 EMBL-EBI Iron-containing alcohol dehydrogenase 5.0E-40
Pfam IPR001670 EMBL-EBI Iron-containing alcohol dehydrogenase 1.2E-10
Sequence
Target Sequence 
>C. ELEGANS:171923_X_AT
attccagcaatgaggacatttcccgaactctttgtgatcgnctgagaggttatatgcgag
actttggagtaaccaaatggactgtcaggaatgggattcgaattttctgattgtgaaatg
cttactgaagcagccatccactccgtcccagatattccaatctctcccaagtctgcggat
cgtgaacattatcagcactctggacgagaagtccccnctntgtattagtcannnnnnnnn
nnnnnnnnnnnnnnnnnnnnnttgtaccatatacgttattgtttgctt

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTCCAGCAATGAGGACATTTCCCG 595 5 27 Antisense
GACATTTCCCGAACTCTTTGTGATC 159 371 41 Antisense
GAGAGGTTATATGCGAGACTTTGGA 680 395 70 Antisense
ATGGACTGTCAGGAATGGGATTCGA 111 53 103 Antisense
GGGATTCGAATTTTCTGATTGTGAA 269 497 119 Antisense
TGCTTACTGAAGCAGCCATCCACTC 177 579 145 Antisense
CTCTCCCAAGTCTGCGGATCGTGAA 497 231 188 Antisense
AAGTCTGCGGATCGTGAACATTATC 94 157 195 Antisense
GAACATTATCAGCACTCTGGACGAG 349 351 210 Antisense
TCAGCACTCTGGACGAGAAGTCCCC 210 625 218 Antisense
GTACCATATACGTTATTGTTTGCTT 108 459 290 Antisense
Sequence Source Affymetrix Proprietary Database