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[171922_x_at]

Description CEK119H8R_rc /REP_DB=TREMBL Accession /GB=D66641 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk119h8 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 62      6grp_high1_10_10 > 36      4grp_highest_8_8 > 15      4grp_high_8_8 > 14      6grp_highest_nonorm > 31      6grp_total > 35      4grp_total > 09      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2826
1 2 3 4 range
A 1356.1
(-3)
P 		1823.4
(-2)
P 		1563.7
(-2.6)
P 		4182
(3)
P 		2826
B 1402
(-3)
P 		1418.3
(-3)
P 		1871.9
(-1.9)
P 		4085.5
(3)
P 		2684
C 1412.1
(-3)
P 		1786.1
(-2)
P 		1638.5
(-2.4)
P 		3703.3
(3)
P 		2291
avr 1390.1
(-3) 		1675.9
(-2.3) 		1691.4
(-2.3) 		3990.3
(3) 		2600

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 937
1 2 3 4 5 6 range
A 1049.6
(1.3)
P 		1226.2
(3)
P 		1019.8
(1)
P 		634.6
(-2.8)
P 		619.1
(-3)
P 		1031
(1.1)
P 		607
B 1221.1
(3)
P 		1153.2
(2.1)
P 		1201.7
(2.7)
P 		903.4
(-1.2)
P 		768.7
(-3)
P 		939.1
(-0.7)
P 		452
C 1556.3
(3)
P 		1023.7
(-1)
P 		955.7
(-1.5)
P 		759.8
(-3)
P 		853.4
(-2.3)
P 		895.1
(-2)
P 		797
avr 1275.7
(3) 		1134.4
(1.4) 		1059.1
(0.5) 		765.9
(-2.8) 		747.1
(-3) 		955.1
(-0.6) 		529
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 520
1 2 3 4 range
A 493.7
(-0.3)
P 		395.8
(-3)
P 		408.8
(-2.6)
P 		612.2
(3)
P 		216
B 447.1
(-1.9)
P 		350.3
(-3)
P 		433.8
(-2)
P 		870.6
(3)
P 		520
C 467.4
(-3)
P 		513.5
(-1.2)
P 		571.1
(1)
P 		624.4
(3)
P 		157
avr 469.4
(-1.9) 		419.9
(-3) 		471.2
(-1.9) 		702.4
(3) 		283

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 424
1 2 3 4 5 6 range
A 193.5
(-2.3)
P 		436.1
(3)
P 		222.1
(-1.7)
P 		160.9
(-3)
P 		186.8
(-2.4)
P 		251
(-1)
P 		275
B 424.9
(3)
P 		383.9
(1.7)
P 		291.8
(-1.3)
P 		239.3
(-3)
P 		312.3
(-0.6)
P 		350.2
(0.6)
P 		186
C 576.9
(3)
P 		312.4
(-0.7)
P 		243.2
(-1.7)
P 		152.8
(-3)
P 		276.2
(-1.3)
P 		299.6
(-0.9)
P 		424
avr 398.4
(3) 		377.5
(2.4) 		252.4
(-1.1) 		184.3
(-3) 		258.4
(-0.9) 		300.3
(0.3) 		214
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171922_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27642
Sequence Type Exemplar sequence
Representative Public ID CEK119H8R NCBI
Target Description CEK119H8R_rc /REP_DB=TREMBL Accession /GB=D66641 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk119h8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071121(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071121 NCBI Caenorhabditis elegans T10B5.5a (T10B5.5) mRNA, complete cds. 11/11 A 
T10B5.5b.2 ENSEMBL cdna:known chromosome:CEL140:V:1872072:1875322:1 gene:T10B5.5 11/11 None
T10B5.5b.1 ENSEMBL cdna:known chromosome:CEL140:V:1872074:1875322:1 gene:T10B5.5 11/11 None
T10B5.5a ENSEMBL cdna:known chromosome:CEL140:V:1872080:1875354:1 gene:T10B5.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
178670 2 1 NM_071121 171922_x_at (11), 182656_at (10)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1874959-1875313(+) 99.44 99.43
Public Domain and Genome References
Ensembl T10B5.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC19232 Hypothetical protein T10B5.5a [Caenorhabditis elegans] ref|NP_503522.1| T10B5.5a [Caenorhabditis elegans] 0.0
blast CAE74146 Hypothetical protein CBG21817 [Caenorhabditis briggsae] 0.0
blast AAO25994 Hypothetical protein T10B5.5b [Caenorhabditis elegans] ref|NP_872179.1| T10B5.5b [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002423 EMBL-EBI Chaperonin Cpn60/TCP-1 8.4E-117
Pfam IPR002423 EMBL-EBI Chaperonin Cpn60/TCP-1 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:171922_X_AT
tacaccatctggaggagcaatgccaggacttcccgggcaataaggagatcaatgtgcccc
tctgtgcattcgctgctttcttttgctgtattcaaatattcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACACCATCTGGAGGAGCAATGCCA 106 643 13 Antisense
TGGAGGAGCAATGCCAGGACTTCCC 101 551 22 Antisense
AATGCCAGGACTTCCCGGGCAATAA 217 161 31 Antisense
GCCAGGACTTCCCGGGCAATAAGGA 317 1 34 Antisense
GGACTTCCCGGGCAATAAGGAGATC 165 497 38 Antisense
CTTCCCGGGCAATAAGGAGATCAAT 136 217 41 Antisense
ATAAGGAGATCAATGTGCCCCTCTG 506 25 52 Antisense
GCTGCTTTCTTTTGCTGTATTCAAA 557 297 84 Antisense
CTGCTTTCTTTTGCTGTATTCAAAT 577 237 85 Antisense
GCTTTCTTTTGCTGTATTCAAATAT 224 305 87 Antisense
TCTTTTGCTGTATTCAAATATTCAA 601 615 91 Antisense
Sequence Source Affymetrix Proprietary Database