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[171921_x_at]

Description CEK098HXR_rc /REP_DB=TREMBL Accession /GB=D72426 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk98h10 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 72      6grp_high1_10_10 > 27      4grp_highest_8_8 > 0      4grp_high_8_8 > 36      6grp_highest_nonorm > 03      6grp_total > 27      4grp_total > 44      6grp_highest_sub > Cu      6grp_cgc > 06      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1959
1 2 3 4 range
A 2108.6
(0)
P 		3075.5
(3)
P 		1593.6
(-1.5)
P 		1116.8
(-3)
P 		1959
B 2041.6
(0.1)
P 		2618.8
(3)
P 		1418.4
(-3)
P 		1464.3
(-2.8)
P 		1200
C 2095.4
(1.9)
P 		2286.1
(3)
P 		1460.3
(-1.6)
P 		1206.7
(-3)
P 		1079
avr 2081.9
(0.5) 		2660.1
(3) 		1490.8
(-2) 		1262.6
(-3) 		1398

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5296
1 2 3 4 5 6 range
A 6187.7
(3)
P 		3868.5
(0.1)
P 		1535.5
(-2.7)
P 		1334.9
(-3)
P 		1320.5
(-3)
P 		3590.2
(-0.2)
P 		4867
B 5920.1
(3)
P 		2963.2
(-0.7)
P 		1593.4
(-2.5)
P 		1480.1
(-2.6)
P 		1182.6
(-3)
P 		2637.7
(-1.2)
P 		4738
C 6478.8
(3)
P 		3128.8
(-0.9)
P 		1866.9
(-2.4)
P 		1376.9
(-3)
P 		1390.1
(-3)
P 		2281.1
(-1.9)
P 		5102
avr 6195.5
(3) 		3320.2
(-0.5) 		1665.3
(-2.5) 		1397.3
(-2.9) 		1297.7
(-3) 		2836.3
(-1.1) 		4898
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 604
1 2 3 4 range
A 767.7
(3)
P 		667.6
(2)
P 		416.6
(-0.5)
P 		163.5
(-3)
P 		604
B 651.1
(3)
P 		646.8
(2.9)
P 		328.7
(-2.7)
P 		312
(-3)
P 		339
C 693.6
(3)
P 		657.3
(2.6)
P 		509
(0.7)
P 		203.5
(-3)
P 		490
avr 704.1
(3) 		657.2
(2.4) 		418.1
(-0.6) 		226.3
(-3) 		478

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2125
1 2 3 4 5 6 range
A 1140.6
(1.6)
P 		1375.8
(3)
P 		334.4
(-3)
P 		338.6
(-3)
P 		398.5
(-2.6)
P 		874.1
(0.1)
P 		1041
B 2059.9
(3)
P 		986.3
(-0.9)
P 		386.9
(-3)
P 		392
(-3)
P 		480.5
(-2.7)
P 		983.6
(-0.9)
P 		1673
C 2401.4
(3)
P 		954.7
(-1.1)
P 		475.2
(-2.4)
P 		276.9
(-3)
P 		449.8
(-2.5)
P 		763.6
(-1.6)
P 		2125
avr 1867.3
(3) 		1105.6
(0) 		398.8
(-2.8) 		335.8
(-3) 		442.9
(-2.6) 		873.8
(-0.9) 		1532
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171921_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27918
Sequence Type Exemplar sequence
Representative Public ID CEK098HXR NCBI
Target Description CEK098HXR_rc /REP_DB=TREMBL Accession /GB=D72426 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk98h10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026111(11), NM_001026112(11), NM_068626(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026111 NCBI Caenorhabditis elegans HIstone H1 Like family member (hil-7) (hil-7) mRNA, complete cds. 11/11 None
NM_001026112 NCBI Caenorhabditis elegans HIstone H1 Like family member (hil-7) (hil-7) mRNA, complete cds. 11/11 None
NM_068626 NCBI Caenorhabditis elegans HIstone H1 Like family member (hil-7) (hil-7) mRNA, complete cds. 11/11 A 
C01B10.5b.2 ENSEMBL cdna:known chromosome:CEL140:IV:6646296:6646875:1 gene:C01B10.5 11/11 A 
C01B10.5b.1 ENSEMBL cdna:known chromosome:CEL140:IV:6646296:6646920:1 gene:C01B10.5 11/11 A 
C01B10.5c ENSEMBL cdna:known chromosome:CEL140:IV:6646296:6646917:1 gene:C01B10.5 11/11 A 
C01B10.5a ENSEMBL cdna:known chromosome:CEL140:IV:6646331:6646923:1 gene:C01B10.5 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_076974 1/11 Cross Hyb Matching Probes A B 
NM_001026113 1/11 Cross Hyb Matching Probes None
SNAP00000026863 6/11 Cross Hyb Matching Probes None
GENEFINDER00000026870 8/11 Cross Hyb Matching Probes None
SNAP00000034834 1/11 Cross Hyb Matching Probes None
C01B10.5e 1/11 Cross Hyb Matching Probes None
F22F1.1 1/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
177433 4 3 NM_001026111 171921_x_at (11), 172045_x_at (11), 172675_x_at (10)
NM_001026112 171921_x_at (11), 172045_x_at (11), 172675_x_at (9)
NM_068626 171921_x_at (11), 172045_x_at (11), 172675_x_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6646414-6646903(+) 99.42 99.42
Public Domain and Genome References
Ensembl C01B10.5
Sequence
Target Sequence 
>C. ELEGANS:171921_X_AT
aggttgctgccaagccaaaggctccaaaggtcaagaaggcctcaccaaagaaggctgctg
ctccaaaggccaagaagccagtgaagaaggccgccgccaagaaatctccagccaagaagg
ccgcaccaaagaagaagtaaacaattcaaatcttcaaatcaaatctctgaaactccagaa
tctcaatcttctatcaaccaccaaaatgccttcatctacattcatttaatgattctaaac
tacctcatctttctcacttttcagtaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGGTTGCTGCCAAGCCAAAGGCTCC 499 57 46 Antisense
CTCACCAAAGAAGGCTGCTGCTCCA 4 229 86 Antisense
GCTGCTGCTCCAAAGGCCAAGAAGC 298 297 99 Antisense
GAAGCCAGTGAAGAAGGCCGCCGCC 374 345 119 Antisense
AAGAAGGCCGCCGCCAAGAAATCTC 579 151 129 Antisense
AAATCTCCAGCCAAGAAGGCCGCAC 521 115 147 Antisense
GAATCTCAATCTTCTATCAACCACC 216 329 223 Antisense
ATCAACCACCAAAATGCCTTCATCT 408 27 238 Antisense
ATGCCTTCATCTACATTCATTTAAT 546 41 251 Antisense
TGATTCTAAACTACCTCATCTTTCT 60 563 275 Antisense
CTCATCTTTCTCACTTTTCAGTAAA 332 229 289 Antisense
Sequence Source Affymetrix Proprietary Database