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[171920_x_at]

Description CEK122A4R_rc /REP_DB=TREMBL Accession /GB=D66748 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk122a4 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 36      6grp_high1_10_10 > 40      4grp_highest_8_8 > 14      4grp_high_8_8 > 23      6grp_highest_nonorm > 09      6grp_total > 52      4grp_total > 16      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11310
1 2 3 4 range
A 24285.8
(-3)
P 		26469.9
(-1.6)
P 		29418.4
(0.4)
P 		33399.3
(3)
P 		9114
B 25128.1
(-3)
P 		27192.5
(-0.8)
P 		29875.6
(2)
P 		30868.9
(3)
P 		5741
C 23965
(-2.8)
P 		25099.2
(-2.2)
P 		23497.3
(-3)
P 		34807.7
(3)
P 		11310
avr 24459.6
(-3) 		26253.9
(-1.7) 		27597.1
(-0.8) 		33025.3
(3) 		8566

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9166
1 2 3 4 5 6 range
A 21876.9
(-2.6)
P 		23238.8
(-1.5)
P 		28789.5
(3)
P 		24944.6
(-0.1)
P 		21380.5
(-3)
P 		22941.3
(-1.7)
P 		7409
B 23425.4
(-0.2)
P 		22496.8
(-0.8)
P 		27640.5
(3)
P 		24869.1
(0.9)
P 		19623.7
(-3)
P 		20572.1
(-2.3)
P 		8017
C 21667.4
(-2.4)
P 		23727.3
(1.1)
P 		24533.6
(2.5)
P 		24852
(3)
P 		21333.4
(-3)
P 		21427.4
(-2.8)
P 		3519
avr 22323.2
(-1.5) 		23154.3
(-0.7) 		26987.9
(3) 		24888.6
(1) 		20779.2
(-3) 		21646.9
(-2.2) 		6209
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3954
1 2 3 4 range
A 8842.5
(3)
P 		5745.9
(-1.7)
P 		7690.5
(1.3)
P 		4889
(-3)
P 		3954
B 8013.1
(3)
P 		6715.9
(-2.4)
P 		6922.9
(-1.6)
P 		6578.2
(-3)
P 		1435
C 7933.1
(2.3)
P 		7216.2
(0.5)
P 		8189.5
(3)
P 		5869.1
(-3)
P 		2320
avr 8262.9
(3) 		6559.3
(-1.1) 		7601
(1.4) 		5778.8
(-3) 		2484

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4232
1 2 3 4 5 6 range
A 4032.8
(-3)
P 		8264.9
(3)
P 		6269.7
(0.2)
P 		6326.5
(0.3)
P 		6451.7
(0.4)
P 		5585.5
(-0.8)
P 		4232
B 8150.9
(3)
P 		7488.2
(0.5)
P 		6712
(-2.5)
P 		6587
(-3)
P 		7972.8
(2.3)
P 		7671.2
(1.2)
P 		1564
C 8031.1
(3)
P 		7239.9
(1.4)
P 		6244.2
(-0.5)
P 		4997.7
(-3)
P 		6903.2
(0.8)
P 		7173
(1.3)
P 		3033
avr 6738.3
(-0.3) 		7664.3
(3) 		6408.6
(-1.4) 		5970.4
(-3) 		7109.2
(1) 		6809.9
(-0) 		1694
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171920_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28076
Sequence Type Exemplar sequence
Representative Public ID CEK122A4R NCBI
Target Description CEK122A4R_rc /REP_DB=TREMBL Accession /GB=D66748 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk122a4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000026528 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12513078:12515552:1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_061347 2/11 Cross Hyb Matching Probes A 
SNAP00000021273 2/11 Cross Hyb Matching Probes None
GENEFINDER00000021284 2/11 Cross Hyb Matching Probes None
T27A1.1 2/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12513093-12513354(+) 46.76 46.76
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94364 Hypothetical protein R11A8.4 [Caenorhabditis elegans] ref|NP_501912.1| yeast SIR related family member (sir-2.1) [Caenorhabditis elegans] 1.0E-109
blast CAE56143 Hypothetical protein CBG23756 [Caenorhabditis briggsae] 5.0E-73
blast NP_036370 sirtuin 1 [Homo sapiens] emb|CAI16036.1| sirtuin (silent mating type information regulation 2 homolog) 1 (S. cerevisiae) [Homo sapiens] gb|AAG38486.1| SIR2alpha protein [Homo sapiens] gb|AAD40849.2| sirtuin type 1 [Homo sapiens] sp|Q96EB6|SIRT1_HUMAN NAD-dependent deacetylase sirtuin-1 (hSIRT1) (hSIR2) (SIR2-like protein 1) 9.0E-18
Protein Domains
Database ID Description E-Value
Pfam IPR003000 EMBL-EBI Silent information regulator protein Sir2 2.0E-6
Sequence
Target Sequence 
>C. ELEGANS:171920_X_AT
taattacccaagtttgaggcttcgttcacggattcccgtctcgaagcaggtcaaacatga
gagagaagtggcgtaagaagcgtatgcgtcgtctgaagcgcaagaggagagccgcaaaga
agtagacaagctgcttcatctccaagacgttcaattttgctgtcaatctgcgatctcggc
ttcaccgtctcttcaacgatcgtcatcgggattgctcgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAATTACCCAAGTTTGAGGCTTCGT 522 175 81 Antisense
GTTTGAGGCTTCGTTCACGGATTCC 513 449 92 Antisense
TCCCGTCTCGAAGCAGGTCAAACAT 479 595 114 Antisense
GCGTAAGAAGCGTATGCGTCGTCTG 570 289 151 Antisense
GCGTCGTCTGAAGCGCAAGAGGAGA 104 293 166 Antisense
GGAGAGCCGCAAAGAAGTAGACAAG 362 517 186 Antisense
GTAGACAAGCTGCTTCATCTCCAAG 13 457 202 Antisense
ATCTCCAAGACGTTCAATTTTGCTG 537 31 218 Antisense
AATTTTGCTGTCAATCTGCGATCTC 617 175 233 Antisense
CCGTCTCTTCAACGATCGTCATCGG 612 263 265 Antisense
ACGATCGTCATCGGGATTGCTCGTC 691 93 276 Antisense
Sequence Source Affymetrix Proprietary Database