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[171919_x_at]

Description CEK130B8R_rc /REP_DB=TREMBL Accession /GB=D65045 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk130b8 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 03      6grp_high1_10_10 > 12      4grp_highest_8_8 > 16      4grp_high_8_8 > 60      6grp_highest_nonorm > 24      6grp_total > 33      4grp_total > 60      6grp_highest_sub > De      6grp_high1_sub > De      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2589
1 2 3 4 range
A 2676.2
(1.6)
P 		3203.8
(2.8)
P 		3288.9
(3)
P 		699.5
(-3)
P 		2589
B 2536.9
(1.3)
P 		2889.5
(2.2)
P 		3186.5
(3)
P 		835.7
(-3)
P 		2351
C 2766.3
(1.8)
P 		3187.3
(2.9)
P 		3245
(3)
P 		789
(-3)
P 		2456
avr 2659.8
(1.6) 		3093.5
(2.6) 		3240.1
(3) 		774.7
(-3) 		2465

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2743
1 2 3 4 5 6 range
A 3304.5
(2)
P 		3567.4
(2.8)
P 		3646.2
(3)
P 		2589.1
(-0.2)
P 		1857.9
(-2.4)
P 		1643.6
(-3)
P 		2003
B 3903.5
(2.9)
P 		3416.5
(1.5)
P 		3954.3
(3)
P 		2623.9
(-0.7)
P 		2120.3
(-2.1)
P 		1799.6
(-3)
P 		2155
C 4265.1
(3)
P 		3210.2
(0.7)
P 		3922.3
(2.3)
P 		2591
(-0.7)
P 		3002.7
(0.2)
P 		1522.1
(-3)
P 		2743
avr 3824.4
(3) 		3398
(1.8) 		3840.9
(3) 		2601.3
(-0.4) 		2327
(-1.2) 		1655.1
(-3) 		2186
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1029
1 2 3 4 range
A 974.4
(3)
P 		695.5
(1.1)
P 		859.8
(2.2)
P 		102.4
(-3)
P 		872
B 809
(3)
P 		713.7
(2.1)
P 		738.4
(2.3)
P 		178.1
(-3)
P 		631
C 915.7
(1.7)
P 		916.4
(1.7)
P 		1131
(3)
P 		133
(-3)
P 		998
avr 899.7
(2.9) 		775.2
(2) 		909.7
(3) 		137.8
(-3) 		772

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1181
1 2 3 4 5 6 range
A 609.2
(-1.6)
P 		1268.7
(3)
P 		794.1
(-0.3)
P 		656.6
(-1.2)
P 		560.6
(-1.9)
P 		400.2
(-3)
P 		869
B 1358.2
(3)
P 		1137.2
(1.1)
P 		960.2
(-0.5)
P 		695
(-2.8)
P 		861.5
(-1.3)
P 		671.1
(-3)
P 		687
C 1580.9
(3)
P 		979.5
(-0.4)
P 		998.3
(-0.3)
P 		521
(-2.9)
P 		971.6
(-0.4)
P 		509.5
(-3)
P 		1071
avr 1182.8
(3) 		1128.5
(2.5) 		917.5
(0.6) 		624.2
(-2.1) 		797.9
(-0.5) 		526.9
(-3) 		656
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171919_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28040
Sequence Type Exemplar sequence
Representative Public ID CEK130B8R NCBI
Target Description CEK130B8R_rc /REP_DB=TREMBL Accession /GB=D65045 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk130b8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) CEK130B8R
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
CEK130B8R CEK130B8R_rc /REP_DB=TREMBL Accession /GB=D65045 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk130b8 : 3prime end, single read. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001028014 6/11 Cross Hyb Matching Probes None
NM_001028015 4/11 Cross Hyb Matching Probes None
SNAP00000038134 4/11 Cross Hyb Matching Probes None
GENEFINDER00000038145 4/11 Cross Hyb Matching Probes None
F37C4.5a.1 6/11 Cross Hyb Matching Probes A 
F37C4.5a.2 6/11 Cross Hyb Matching Probes A 
F37C4.5b 4/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Sequence
Target Sequence 
>C. ELEGANS:171919_X_AT
ctacaccgtccaatttgcaccaggacagtccagcactttcgtcgtcaagtacnctaccga
gcacccacaggctgagcaaattcgctatgaggagaagttctgaagtgcttatgcgatga

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTACACCGTCCAATTTGCACCAGGA 496 225 158 Antisense
CACCGTCCAATTTGCACCAGGACAG 492 201 161 Antisense
CCAATTTGCACCAGGACAGTCCAGC 302 277 167 Antisense
TGCACCAGGACAGTCCAGCACTTTC 57 579 173 Antisense
CACCAGGACAGTCCAGCACTTTCGT 626 201 175 Antisense
GAGCACCCACAGGCTGAGCAAATTC 58 391 216 Antisense
ACCCACAGGCTGAGCAAATTCGCTA 35 91 220 Antisense
CAGGCTGAGCAAATTCGCTATGAGG 213 209 225 Antisense
GCAAATTCGCTATGAGGAGAAGTTC 492 309 233 Antisense
GGAGAAGTTCTGAAGTGCTTATGCG 680 519 248 Antisense
AAGTTCTGAAGTGCTTATGCGATGA 78 157 252 Antisense
Sequence Source Affymetrix Proprietary Database