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[171918_x_at]

Description CEK129F1R_rc /REP_DB=TREMBL Accession /GB=D65010 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk129f1 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 92      6grp_high1_10_10 > 39      4grp_highest_8_8 > 39      4grp_high_8_8 > 04      6grp_highest_nonorm > 86      6grp_total > 49      4grp_total > 04      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1601
1 2 3 4 range
A 1742
(-0.5)
P 		1212.2
(-3)
P 		1326.9
(-2.5)
P 		2485.2
(3)
P 		1273
B 1832.7
(-0.1)
P 		1279
(-3)
P 		1368.8
(-2.5)
P 		2435.7
(3)
P 		1157
C 1593.6
(-1.4)
P 		1335.9
(-2.4)
P 		1170.2
(-3)
P 		2770.9
(3)
P 		1601
avr 1722.8
(-0.9) 		1275.7
(-3) 		1288.6
(-2.9) 		2563.9
(3) 		1288

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 773
1 2 3 4 5 6 range
A 981.4
(2.2)
P 		819
(-0.7)
P 		762.4
(-1.7)
P 		693
(-3)
P 		1026
(3)
P 		1024.8
(3)
P 		333
B 1394.3
(3)
P 		809.7
(-1.7)
P 		641.7
(-3)
P 		759.4
(-2.1)
P 		1124.8
(0.9)
P 		1205.9
(1.5)
P 		753
C 1141.3
(3)
P 		758.6
(-1.4)
P 		751
(-1.5)
P 		621.8
(-3)
P 		928.9
(0.5)
P 		1119.8
(2.8)
P 		520
avr 1172.3
(3) 		795.8
(-1.7) 		718.4
(-2.7) 		691.4
(-3) 		1026.6
(1.2) 		1116.8
(2.3) 		481
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 371
1 2 3 4 range
A 634.3
(3)
P 		263.1
(-3)
P 		346.9
(-1.6)
P 		363.8
(-1.4)
P 		371
B 584.4
(3)
P 		315.9
(-3)
P 		317.2
(-3)
P 		519.1
(1.5)
P 		269
C 527.5
(3)
P 		384.1
(-3)
P 		407.9
(-2)
P 		467.2
(0.5)
P 		143
avr 582.1
(3) 		321
(-3) 		357.3
(-2.2) 		450
(-0) 		261

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 360
1 2 3 4 5 6 range
A 180.9
(-2.4)
P 		291.3
(2.2)
P 		166
(-3)
P 		175.8
(-2.6)
P 		309.6
(3)
P 		249.5
(0.5)
P 		144
B 485.1
(3)
P 		269.5
(-0.9)
P 		155.8
(-3)
P 		201.1
(-2.2)
P 		457
(2.5)
P 		449.7
(2.4)
P 		329
C 423
(3)
P 		231.5
(-0.9)
P 		191.1
(-1.7)
P 		125.1
(-3)
P 		300.6
(0.5)
P 		374.8
(2)
P 		298
avr 363
(3) 		264.1
(-0) 		171
(-2.9) 		167.3
(-3) 		355.7
(2.8) 		358
(2.8) 		196
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171918_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28012
Sequence Type Exemplar sequence
Representative Public ID CEK129F1R NCBI
Target Description CEK129F1R_rc /REP_DB=TREMBL Accession /GB=D65010 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk129f1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064164(11), NM_064165(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064164 NCBI Caenorhabditis elegans Y17G7B.10a (Y17G7B.10) mRNA, complete cds. 11/11 A 
NM_064165 NCBI Caenorhabditis elegans Y17G7B.10b (Y17G7B.10) mRNA, complete cds. 11/11 A 
SNAP00000030324 ENSEMBL cdna:SNAP chromosome:CEL140:II:12054369:12060943:1 10/11 None
GENEFINDER00000030397 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12042885:12060067:1 9/11 None
Y17G7B.10a.1 ENSEMBL cdna:known chromosome:CEL140:II:12049480:12059673:1 gene:Y17G7B.10 11/11 None
Y17G7B.10a.6 ENSEMBL cdna:known chromosome:CEL140:II:12049486:12059673:1 gene:Y17G7B.10 11/11 None
Y17G7B.10a.4 ENSEMBL cdna:known chromosome:CEL140:II:12049486:12059673:1 gene:Y17G7B.10 11/11 None
Y17G7B.10b.1 ENSEMBL cdna:known chromosome:CEL140:II:12054216:12059757:1 gene:Y17G7B.10 11/11 None
Y17G7B.10a.5 ENSEMBL cdna:known chromosome:CEL140:II:12054216:12059673:1 gene:Y17G7B.10 11/11 None
Y17G7B.10a.3 ENSEMBL cdna:known chromosome:CEL140:II:12054216:12059673:1 gene:Y17G7B.10 11/11 None
Y17G7B.10b.2 ENSEMBL cdna:known chromosome:CEL140:II:12054238:12059753:1 gene:Y17G7B.10 11/11 None
Y17G7B.10a.2 ENSEMBL cdna:known chromosome:CEL140:II:12054386:12059673:1 gene:Y17G7B.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12058551-12059737(+) 93.84 93.84
Public Domain and Genome References
Ensembl Y17G7B.10
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA19456 Hypothetical protein Y17G7B.10b [Caenorhabditis elegans] ref|NP_496566.1| Y17G7B.10b [Caenorhabditis elegans] 0.0
blast CAA19455 Hypothetical protein Y17G7B.10a [Caenorhabditis elegans] ref|NP_496565.2| Y17G7B.10a [Caenorhabditis elegans] 0.0
blast CAE73550 Hypothetical protein CBG21019 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR009286 EMBL-EBI Protein of unknown function DUF941 9.7E-85
Pfam IPR009286 EMBL-EBI Protein of unknown function DUF941 5.3E-116
Sequence
Target Sequence 
>C. ELEGANS:171918_X_AT
gatcctgatcgcaaacaactcgcattctcagtccgtgatccgatcttcaacgcgacgttc
ccaccaaccgatccacggggattcgccgataaaatttgcatcaagagccgcggttacgat
gctcatttggtcattgacggaggcatctcgtatcgatttaacgatggatccgaggcggtg
atggaggttcgggatgaggatacgttgcgtacggttgtattccgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCCTGATCGCAAACAACTCGCAT 115 417 60 Antisense
TCGCAAACAACTCGCATTCTCAGTC 212 601 68 Antisense
TCCGTGATCCGATCTTCAACGCGAC 296 593 91 Antisense
CGATCCACGGGGATTCGCCGATAAA 577 187 128 Antisense
TTTGCATCAAGAGCCGCGGTTACGA 483 667 154 Antisense
GCGGTTACGATGCTCATTTGGTCAT 72 293 169 Antisense
GACGGAGGCATCTCGTATCGATTTA 44 375 195 Antisense
TTTAACGATGGATCCGAGGCGGTGA 418 665 216 Antisense
GAGGCGGTGATGGAGGTTCGGGATG 629 405 231 Antisense
GGTTCGGGATGAGGATACGTTGCGT 375 507 245 Antisense
ACGTTGCGTACGGTTGTATTCCGAT 632 35 261 Antisense
Sequence Source Affymetrix Proprietary Database