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[171917_x_at]

Description CEK121D6R_rc /REP_DB=TREMBL Accession /GB=D66706 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk121d6 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 13      6grp_high1_10_10 > 31      4grp_highest_8_8 > 17      4grp_high_8_8 > 61      6grp_highest_nonorm > 06      6grp_total > 33      4grp_total > 58      6grp_high1_sub > 03      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4606
1 2 3 4 range
A 11409.4
(-0.1)
P 		13444.9
(3)
P 		12358.4
(1.4)
P 		9483.2
(-3)
P 		3962
B 10886.2
(-1.3)
P 		11287.4
(-0.7)
P 		13905.7
(3)
P 		9660.6
(-3)
P 		4245
C 9920.5
(-0.1)
P 		10067.6
(0.6)
P 		10576.3
(3)
P 		9299.3
(-3)
P 		1277
avr 10738.7
(-0.3) 		11600
(1.5) 		12280.1
(3) 		9481
(-3) 		2799

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5823
1 2 3 4 5 6 range
A 12194.2
(3)
P 		9462.7
(-0.1)
P 		12069.6
(2.9)
P 		9583.4
(0)
P 		8359.7
(-1.4)
P 		6971.3
(-3)
P 		5223
B 10389.6
(-0.1)
P 		11123.7
(0.8)
P 		12794.6
(3)
P 		8405.1
(-2.7)
P 		8661.5
(-2.3)
P 		8153.1
(-3)
P 		4642
C 10486.2
(1.9)
P 		10934.8
(3)
P 		10458
(1.8)
P 		8447.8
(-3)
P 		10189.7
(1.2)
P 		8494.9
(-2.9)
P 		2487
avr 11023.3
(1.8) 		10507.1
(1.1) 		11774.1
(3) 		8812.1
(-1.6) 		9070.3
(-1.2) 		7873.1
(-3) 		3901
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2766
1 2 3 4 range
A 4154.2
(3)
P 		2918.5
(0.3)
P 		3230.7
(1)
P 		1388.2
(-3)
P 		2766
B 3471.5
(3)
P 		2787.7
(0.1)
P 		3222.3
(1.9)
P 		2058.7
(-3)
P 		1413
C 3284
(1.9)
P 		2894.5
(0.8)
P 		3686.2
(3)
P 		1568
(-3)
P 		2118
avr 3636.6
(3) 		2866.9
(0.6) 		3379.7
(2.2) 		1671.6
(-3) 		1965

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2190
1 2 3 4 5 6 range
A 2247.9
(-1)
P 		3365.4
(3)
P 		2628.5
(0.3)
P 		2430.6
(-0.4)
P 		2522.6
(-0)
P 		1697.3
(-3)
P 		1668
B 3615.1
(2.6)
P 		3702.6
(3)
P 		3106.9
(0.6)
P 		2226.2
(-3)
P 		3519
(2.3)
P 		3040.3
(0.3)
P 		1476
C 3886.8
(3)
P 		3336.5
(1.5)
P 		2661.7
(-0.4)
P 		1698.9
(-3)
P 		3297.2
(1.4)
P 		2843.7
(0.1)
P 		2188
avr 3249.9
(2) 		3468.2
(3) 		2799
(0) 		2118.6
(-3) 		3112.9
(1.4) 		2527.1
(-1.2) 		1350
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171917_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28073
Sequence Type Exemplar sequence
Representative Public ID CEK121D6R NCBI
Target Description CEK121D6R_rc /REP_DB=TREMBL Accession /GB=D66706 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk121d6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_182293, NM_067812, NM_067813
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y69A2AR.18a.3 ENSEMBL cdna:known chromosome:CEL140:IV:2495731:2497674:1 gene:Y69A2AR.18 None
Y69A2AR.18a.4 ENSEMBL cdna:known chromosome:CEL140:IV:2495731:2497674:1 gene:Y69A2AR.18 None
SNAP00000018804 ENSEMBL cdna:SNAP chromosome:CEL140:IV:2495747:2497415:1 None
Y69A2AR.18c ENSEMBL cdna:known chromosome:CEL140:IV:2495747:2497566:1 gene:Y69A2AR.18 A 
Y69A2AR.18a.2 ENSEMBL cdna:known chromosome:CEL140:IV:2495740:2497674:1 gene:Y69A2AR.18 A 
Y69A2AR.18a.1 ENSEMBL cdna:known chromosome:CEL140:IV:2495743:2497674:1 gene:Y69A2AR.18 A 
NM_067813 NCBI Caenorhabditis elegans Y69A2AR.18a (Y69A2AR.18) mRNA, complete cds. A 
Y69A2AR.18b ENSEMBL cdna:known chromosome:CEL140:IV:2495747:2497590:1 gene:Y69A2AR.18 A 
NM_067812 NCBI Caenorhabditis elegans Y69A2AR.18b (Y69A2AR.18) mRNA, complete cds. A 
NM_182293 NCBI Caenorhabditis elegans Y69A2AR.18c (Y69A2AR.18) mRNA, complete cds. None
GENEFINDER00000018832 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:2495747:2497415:1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:2497319-2497620(+) 87.5 87.5
Public Domain and Genome References
Ensembl Y69A2AR.18
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAL00872 Hypothetical protein Y69A2AR.18b [Caenorhabditis elegans] ref|NP_500213.1| Y69A2AR.18b [Caenorhabditis elegans] 1.0E-164
blast AAK68562 Hypothetical protein Y69A2AR.18a [Caenorhabditis elegans] ref|NP_500214.1| Y69A2AR.18a [Caenorhabditis elegans] 1.0E-152
blast CAE74688 Hypothetical protein CBG22500 [Caenorhabditis briggsae] 1.0E-135
Protein Domains
Database ID Description E-Value
Pfam IPR000131 EMBL-EBI H+-transporting two-sector ATPase, gamma subunit 4.7E-99
Pfam IPR000131 EMBL-EBI H+-transporting two-sector ATPase, gamma subunit 4.3E-61
Pfam IPR000131 EMBL-EBI H+-transporting two-sector ATPase, gamma subunit 1.8E-44
Sequence
Target Sequence 
>C. ELEGANS:171917_X_AT
ctcccatgggcggagcatcgaagaacgccggagaaatgatcgacaagcttacattggcct
tcaacagaactcgtcaagcagtgattactcgcgaacttatcgaaatcatctctggagctg
cctgcgtctaaatatctctctctatctgtcccttttatacatccattgttgttcaaacta
tcgctgtttcgacgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCCCATGGGCGGAGCATCGAAGAA 90 235 19 Antisense
AACGCCGGAGAAATGATCGACAAGC 367 145 42 Antisense
CGACAAGCTTACATTGGCCTTCAAC 171 251 59 Antisense
GGCCTTCAACAGAACTCGTCAAGCA 4 545 74 Antisense
GTCAAGCAGTGATTACTCGCGAACT 443 463 91 Antisense
CGAAATCATCTCTGGAGCTGCCTGC 111 253 119 Antisense
GAGCTGCCTGCGTCTAAATATCTCT 522 387 133 Antisense
TCTAAATATCTCTCTCTATCTGTCC 569 613 145 Antisense
CTATCTGTCCCTTTTATACATCCAT 135 225 160 Antisense
GTCCCTTTTATACATCCATTGTTGT 620 475 166 Antisense
TTCAAACTATCGCTGTTTCGACGCC 545 683 190 Antisense
Sequence Source Affymetrix Proprietary Database