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[171916_s_at]

Description CEK120E7R_rc /REP_DB=TREMBL Accession /GB=D66675 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk120e7 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 50      6grp_high1_10_10 > 16      4grp_highest_8_8 > 47      4grp_high_8_8 > 11      6grp_highest_nonorm > 11      6grp_total > 06      4grp_total > 21      6grp_highest_sub > De      6grp_total_sub > Decrease      6grp_high1_sub > De      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2189
1 2 3 4 range
A 2053.1
(-0.1)
P 		1832.1
(-0.7)
P 		1006.9
(-3)
P 		3160.9
(3)
P 		2154
B 2299.5
(0.8)
P 		1551.3
(-1.4)
P 		971.9
(-3)
P 		3091.3
(3)
P 		2119
C 2100
(0.5)
P 		1364.1
(-2.3)
P 		1185
(-3)
P 		2736.8
(3)
P 		1552
avr 2150.9
(0.4) 		1582.5
(-1.4) 		1054.6
(-3) 		2996.3
(3) 		1942

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1684
1 2 3 4 5 6 range
A 2824.5
(3)
P 		1988.8
(-0)
P 		1169
(-3)
P 		1283.8
(-2.6)
P 		1439.2
(-2)
P 		1272.9
(-2.6)
P 		1656
B 2053.1
(3)
P 		1881.4
(1.9)
P 		1468.1
(-0.9)
P 		1396
(-1.4)
P 		1253.7
(-2.3)
P 		1149.1
(-3)
P 		904
C 1863.9
(3)
P 		1841.6
(2.8)
P 		1505.8
(0)
P 		1214.6
(-2.4)
P 		1393.6
(-0.9)
P 		1140.1
(-3)
P 		724
avr 2247.2
(3) 		1903.9
(1.1) 		1381
(-1.9) 		1298.1
(-2.4) 		1362.2
(-2) 		1187.4
(-3) 		1060
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 522
1 2 3 4 range
A 747.5
(3)
P 		397.7
(-1.3)
P 		263.2
(-3)
P 		462.7
(-0.5)
P 		484
B 733.3
(3)
P 		383.1
(-1.1)
P 		225.2
(-3)
P 		658.8
(2.1)
P 		508
C 695.1
(3)
P 		392.2
(-3)
P 		413
(-2.6)
P 		461.5
(-1.6)
P 		303
avr 725.3
(3) 		391
(-1.7) 		300.5
(-3) 		527.7
(0.2) 		425

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 470
1 2 3 4 5 6 range
A 520.7
(0.5)
P 		707.3
(3)
P 		254.6
(-3)
P 		325.6
(-2.1)
P 		434.3
(-0.6)
P 		309.9
(-2.3)
P 		453
B 714.4
(3)
P 		626.2
(1.5)
P 		356.5
(-3)
P 		369.7
(-2.8)
P 		509.4
(-0.4)
P 		428.5
(-1.8)
P 		358
C 690.9
(3)
P 		561.9
(1.3)
P 		383.2
(-1.1)
P 		244.2
(-3)
P 		450.9
(-0.2)
P 		381.7
(-1.2)
P 		447
avr 642
(3) 		631.8
(2.8) 		331.4
(-2.7) 		313.2
(-3) 		464.9
(-0.2) 		373.4
(-1.9) 		329
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171916_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27964
Sequence Type Exemplar sequence
Representative Public ID CEK120E7R NCBI
Target Description CEK120E7R_rc /REP_DB=TREMBL Accession /GB=D66675 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk120e7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_182246(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_182246 NCBI Caenorhabditis elegans ZK131.11b (ZK131.11) mRNA, complete cds. 11/11 None
ZK131.11b ENSEMBL cdna:known chromosome:CEL140:II:13792126:13817549:1 gene:ZK131.11 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
175024 2 1 NM_182246 171916_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13817299-13817518(+) 65.77 65.77
Public Domain and Genome References
Ensembl ZK131.11
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD54180 Hypothetical protein ZK131.11b [Caenorhabditis elegans] emb|CAD54120.1| Hypothetical protein ZK131.11b [Caenorhabditis elegans] ref|NP_872046.1| ZK131.11b [Caenorhabditis elegans] 0.0
blast CAE73269 Hypothetical protein CBG20685 [Caenorhabditis briggsae] 1.0E-157
blast CAB05840 Hypothetical protein ZK131.11a [Caenorhabditis elegans] ref|NP_496886.2| ZK131.11a [Caenorhabditis elegans] 1.0E-147
Sequence
Target Sequence 
>C. ELEGANS:171916_S_AT
taattatgtaaatatatgcccctattctttaaagaaacatgtatttcattgtcgaggtgc
acacacacacattttctccccaaactcannnnnnnnnnnnnnnnnnnnnnnnnnnnnacg
ctcaccaagtctctgagtgctc

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAATTATGTAAATATATGCCCCTAT 300 635 138 Antisense
GTAAATATATGCCCCTATTCTTTAA 620 461 145 Antisense
ATATATGCCCCTATTCTTTAAAGAA 143 19 149 Antisense
ATGCCCCTATTCTTTAAAGAAACAT 581 37 153 Antisense
GAAACATGTATTTCATTGTCGAGGT 370 355 171 Antisense
CATGTATTTCATTGTCGAGGTGCAC 75 211 175 Antisense
GTATTTCATTGTCGAGGTGCACACA 611 453 178 Antisense
TTTCATTGTCGAGGTGCACACACAC 134 673 181 Antisense
CATTGTCGAGGTGCACACACACACA 381 217 184 Antisense
TGTCGAGGTGCACACACACACATTT 608 557 187 Antisense
ACGCTCACCAAGTCTCTGAGTGCTC 40 91 255 Antisense
Sequence Source Affymetrix Proprietary Database