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[171915_at]

Description CEK110HXR_rc /REP_DB=TREMBL Accession /GB=D72891 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk110h10 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 92      6grp_high1_10_10 > 49      4grp_highest_8_8 > 30      4grp_high_8_8 > 05      6grp_highest_nonorm > 58      6grp_total > 49      4grp_total > 04      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4253
1 2 3 4 range
A 5145.6
(-1.6)
P 		4271.4
(-3)
P 		4805
(-2.1)
P 		7964.8
(3)
P 		3693
B 4560.9
(0.2)
P 		4174.8
(-2.6)
P 		4116.3
(-3)
P 		4959.4
(3)
P 		843
C 4543.8
(-1.7)
P 		3712.3
(-3)
P 		4339
(-2)
P 		7559
(3)
P 		3847
avr 4750.1
(-1.5) 		4052.8
(-3) 		4420.1
(-2.2) 		6827.7
(3) 		2775

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4496
1 2 3 4 5 6 range
A 1381.2
(-2.7)
P 		4488.5
(3)
P 		1826
(-1.9)
P 		4381.1
(2.8)
P 		1232.7
(-3)
P 		3581.9
(1.3)
P 		3256
B 2614.4
(3)
P 		672.3
(-3)
P 		794.8
(-2.6)
P 		769.1
(-2.7)
P 		1695.4
(0.2)
P 		2531.7
(2.7)
P 		1942
C 4891.7
(2.7)
P 		649.9
(-3)
P 		3812.3
(1.2)
P 		756.4
(-2.9)
P 		5146
(3)
P 		2801.4
(-0.1)
P 		4496
avr 2962.4
(2.9) 		1936.9
(-3) 		2144.4
(-1.8) 		1968.9
(-2.8) 		2691.4
(1.4) 		2971.7
(3) 		1035
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 946
1 2 3 4 range
A 1873.5
(3)
P 		927.2
(-3)
P 		1256.1
(-0.9)
P 		1165.9
(-1.5)
P 		946
B 1454.4
(3)
P 		1031.1
(-2.1)
P 		953.8
(-3)
P 		1056.9
(-1.8)
P 		501
C 1504.1
(2.9)
P 		1067.3
(-3)
P 		1512.3
(3)
P 		1274.6
(-0.2)
P 		445
avr 1610.7
(3) 		1008.5
(-3) 		1240.7
(-0.7) 		1165.8
(-1.4) 		602

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1661
1 2 3 4 5 6 range
A 254.6
(-3)
P 		1596.3
(3)
P 		397.7
(-2.4)
P 		1111.2
(0.8)
P 		372
(-2.5)
P 		872.1
(-0.2)
P 		1342
B 909.7
(2.7)
P 		223.8
(-2.8)
P 		193
(-3)
P 		203.7
(-2.9)
P 		688.8
(1)
P 		944.1
(3)
P 		751
C 1813.1
(3)
P 		198.3
(-2.8)
P 		970.3
(-0)
P 		152.1
(-3)
P 		1665.2
(2.5)
P 		937.8
(-0.2)
P 		1661
avr 992.5
(3) 		672.8
(-0.8) 		520.3
(-2.6) 		489
(-3) 		908.7
(2) 		918
(2.1) 		504
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 171915_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27786
Sequence Type Exemplar sequence
Representative Public ID CEK110HXR NCBI
Target Description CEK110HXR_rc /REP_DB=TREMBL Accession /GB=D72891 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk110h10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) CEK110HXR
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
CEK110HXR CEK110HXR_rc /REP_DB=TREMBL Accession /GB=D72891 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk110h10 : 3prime end, single read. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrM:2859-3212(+) 96.19 96.19
Sequence
Target Sequence 
>C. ELEGANS:171915_AT
gtccttgtggaatggttgaatttacttttgtttatgctgctgtagcgtgattaagtactt
tgttaacttttatttcaagagaaaanttttcagtttatataagaaaaccaggagacacat
atttgaaaactcttagaatgctattaattgaaatcgttagagaattttctcgtccacttg
ctttaacagtgcgtttaacagttaatattactgttggtcatttagttagaataatgcttt
atcaaggattagaattaagaataggtgatcagtatatttgattatcaattttagccatta
ta

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCCTTGTGGAATGGTTGAATTTAC 611 475 27 Antisense
GAATTTACTTTTGTTTATGCTGCTG 392 325 44 Antisense
GTTTATGCTGCTGTAGCGTGATTAA 276 449 56 Antisense
GCTGTAGCGTGATTAAGTACTTTGT 497 295 65 Antisense
GAAAACCAGGAGACACATATTTGAA 293 355 129 Antisense
GAAAACTCTTAGAATGCTATTAATT 454 355 151 Antisense
TAGAGAATTTTCTCGTCCACTTGCT 580 651 184 Antisense
CTCGTCCACTTGCTTTAACAGTGCG 75 229 195 Antisense
CTTGCTTTAACAGTGCGTTTAACAG 338 219 203 Antisense
GTTAATATTACTGTTGGTCATTTAG 14 447 227 Antisense
TTGATTATCAATTTTAGCCATTATA 305 703 304 Antisense
Sequence Source Affymetrix Proprietary Database