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[171914_x_at]

Description CEK105FXR_rc /REP_DB=TREMBL Accession /GB=D72596 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk105f10 : 3prime end, single read.
Cluster 6grp_total > 53      4grp_total > 10      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 3.9
(-3)
A 		5.7
(0.5)
A 		7
(3)
A 		5
(-0.9)
A 		3
B 7
(-2.1)
A 		4.2
(-2.8)
A 		3.4
(-3)
A 		26.9
(3)
A 		24
C 3.7
(-3)
A 		6.3
(2.4)
A 		5.2
(0.1)
A 		6.6
(3)
A 		3
avr 4.9
(-3) 		5.4
(-2.6) 		5.2
(-2.8) 		12.8
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 11.7
(-1.8)
A 		4.7
(-3)
A 		38.3
(3)
A 		5
(-2.9)
A 		5.7
(-2.8)
A 		6.2
(-2.7)
A 		34
B 4.3
(-3)
A 		6.7
(-1.1)
A 		8.2
(0.1)
A 		11.9
(3)
A 		10.1
(1.6)
A 		6
(-1.7)
A 		8
C 6.6
(2.8)
A 		3.1
(-2.8)
A 		6.7
(3)
A 		5.1
(0.4)
A 		3.8
(-1.7)
A 		3
(-3)
A 		4
avr 7.5
(-1.7) 		4.8
(-3) 		17.7
(3) 		7.3
(-1.8) 		6.5
(-2.2) 		5.1
(-2.9) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 1.4
(0.8)
A 		1.2
(-0.3)
A 		1.8
(3)
A 		0.7
(-3)
A 		1
B 2.2
(-1.3)
A 		1
(-2.8)
A 		0.8
(-3)
A 		5.7
(3)
A 		5
C 1.2
(-2.1)
A 		1.8
(3)
A 		1.8
(3)
A 		1.1
(-3)
A 		1
avr 1.6
(-1.5) 		1.3
(-3) 		1.5
(-2) 		2.5
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 2.2
(-2.2)
A 		1.7
(-2.7)
A 		8.3
(3)
A 		1.3
(-3)
A 		1.7
(-2.7)
A 		1.5
(-2.8)
A 		7
B 1.5
(-3)
A 		2.2
(-1.4)
A 		2
(-1.8)
A 		3.1
(0.7)
A 		4.1
(3)
A 		2.2
(-1.4)
A 		3
C 2.5
(3)
A 		1
(-3)
A 		1.7
(-0.2)
A 		1
(-3)
A 		1.2
(-2.2)
A 		1
(-3)
A 		2
avr 2.1
(-1.8) 		1.6
(-3) 		4
(3) 		1.8
(-2.5) 		2.3
(-1.3) 		1.6
(-3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171914_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27934
Sequence Type Exemplar sequence
Representative Public ID CEK105FXR NCBI
Target Description CEK105FXR_rc /REP_DB=TREMBL Accession /GB=D72596 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk105f10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071170
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000033960 ENSEMBL cdna:SNAP chromosome:CEL140:V:2099938:2100293:-1 None
SNAP00000033961 ENSEMBL cdna:SNAP chromosome:CEL140:V:2100982:2102885:-1 None
GENEFINDER00000033962 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2099916:2103035:-1 None
NM_071170 NCBI Caenorhabditis elegans F36F12.1 (F36F12.1) mRNA, complete cds. A 
F36F12.1 ENSEMBL cdna:known chromosome:CEL140:V:2099918:2103035:-1 gene:F36F12.1 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2099917-2101101(-) 94.13 94.13
Public Domain and Genome References
Gene Title
Ensembl F36F12.1
Entrez Gene 178691 Entrez gene
SwissProt O76403 EMBL-EBI
WormBase CE17781 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC19200 Hypothetical protein F36F12.1 [Caenorhabditis elegans] ref|NP_503571.1| F36F12.1 [Caenorhabditis elegans] 0.0
blast CAE66796 Hypothetical protein CBG12157 [Caenorhabditis briggsae] 0.0
blast CAE66796 Hypothetical protein CBG12157 [Caenorhabditis briggsae] 1.0E-162
blast CAE75235 Hypothetical protein CBG23186 [Caenorhabditis briggsae] 1.0E-117
Protein Domains
Database ID Description E-Value
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.0E-126
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 4.5E-15
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.1E-113
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.1E-125
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503571.1 1 20-39
F36F12.1 1 20-39
Sequence
Target Sequence 
>C. ELEGANS:171914_X_AT
ttgagtgaggaacagctggcagagattgatcaggaattgaaagagacgctcctcatgccg
agtattcaagaatttgtgaaacaattgccaaccggagattattattcaacgaaattgaag
gcttgcctggaagctcaaaagcagggaaaggggcaatgtgtggatacgaaagcgtgcaag
ctccccaacaacgacgaaatcccatgtcgacactctgatggtctccatcaccccgggaaa
gtcccaaaaccttacacattccattttgtctccgaatattatcttac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGAGTGAGGAACAGCTGGCAGAGA 202 679 39 Antisense
ATTGAAAGAGACGCTCCTCATGCCG 617 5 74 Antisense
CGCTCCTCATGCCGAGTATTCAAGA 540 255 85 Antisense
CCAACCGGAGATTATTATTCAACGA 296 275 126 Antisense
GAAGGCTTGCCTGGAAGCTCAAAAG 487 333 155 Antisense
GGAAAGGGGCAATGTGTGGATACGA 406 527 183 Antisense
GGATACGAAAGCGTGCAAGCTCCCC 175 509 200 Antisense
TCCCCAACAACGACGAAATCCCATG 469 585 220 Antisense
ATGTCGACACTCTGATGGTCTCCAT 158 49 242 Antisense
AACCTTACACATTCCATTTTGTCTC 584 147 286 Antisense
ATTTTGTCTCCGAATATTATCTTAC 182 15 301 Antisense
Sequence Source Affymetrix Proprietary Database