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[171913_x_at]

Description C58173 /REP_DB=TREMBL Accession /GB=C58173 /FEA=Transcript Cluster /REVCOMP /DEF=C.elegans cDNA clone yk362f12 : 3prime end, single read.
Cluster 6grp_total > 64      4grp_total > 18      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 2.5
(-3)
A 		5.8
(3)
A 		3.9
(-0.5)
A 		5.7
(2.8)
A 		3
B 3.4
(-3)
A 		3.7
(-2.5)
A 		3.9
(-2.1)
A 		6.7
(3)
A 		3
C 3
(-2.5)
A 		4.2
(-1.2)
A 		2.5
(-3)
A 		8.1
(3)
A 		6
avr 3
(-3) 		4.6
(-0.5) 		3.4
(-2.4) 		6.8
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 8.3
(3)
A 		3.5
(-3)
A 		6.5
(0.7)
A 		3.7
(-2.8)
A 		5.4
(-0.6)
A 		5.4
(-0.6)
A 		5
B 2.7
(-3)
A 		2.7
(-3)
A 		8
(1.6)
A 		4.1
(-1.8)
A 		6.4
(0.2)
A 		9.6
(3)
A 		7
C 2.7
(-3)
A 		3.9
(-2)
A 		6.5
(0.2)
A 		9.8
(3)
A 		4.9
(-1.1)
A 		3.1
(-2.7)
A 		7
avr 4.6
(-1) 		3.4
(-3) 		7
(3) 		5.9
(1.2) 		5.6
(0.7) 		6
(1.3) 		4
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1
1 2 3 4 range
A 0.9
(-1.8)
A 		1.3
(3)
A 		1
(-0.6)
A 		0.8
(-3)
A 		1
B 1.1
(-0.6)
A 		0.9
(-3)
A 		0.9
(-3)
A 		1.4
(3)
A 		0
C 1
(-1.8)
A 		1.2
(0.6)
A 		0.9
(-3)
A 		1.4
(3)
A 		0
avr 1
(-1) 		1.1
(1) 		0.9
(-3) 		1.2
(3) 		0

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 1.5
(2.1)
A 		1.2
(-0.4)
A 		1.4
(1.3)
A 		0.9
(-3)
A 		1.6
(3)
A 		1.3
(0.4)
A 		1
B 1
(-2.8)
A 		0.9
(-3)
A 		1.9
(-0.8)
A 		1.1
(-2.6)
A 		2.6
(0.8)
A 		3.6
(3)
A 		3
C 1
(-3)
A 		1.2
(-1.8)
A 		1.7
(1.2)
A 		2
(3)
A 		1.6
(0.6)
A 		1
(-3)
A 		1
avr 1.2
(-2.3) 		1.1
(-3) 		1.7
(1) 		1.3
(-1.7) 		1.9
(2.3) 		2
(3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171913_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28279
Sequence Type Exemplar sequence
Representative Public ID C58173 NCBI
Target Description C58173 /REP_DB=TREMBL Accession /GB=C58173 /FEA=Transcript Cluster /REVCOMP /DEF=C.elegans cDNA clone yk362f12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000002015 ENSEMBL cdna:SNAP chromosome:CEL140:III:1179943:1212009:-1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_064943 9/11 Negative Strand Matching Probes A 
Y119D3B.13 9/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1183409-1184871(-) 99.03 99.03
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK29716 Hypothetical protein Y119D3B.14 [Caenorhabditis elegans] ref|NP_497345.1| Y119D3B.14 [Caenorhabditis elegans] 0.0
blast AAK29715 Hypothetical protein Y119D3B.16 [Caenorhabditis elegans] ref|NP_497347.2| Y119D3B.16 [Caenorhabditis elegans] 0.0
blast CAE69118 Hypothetical protein CBG15144 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000640 EMBL-EBI Elongation factor G, C-terminal 2.8E-5
Pfam IPR000795 EMBL-EBI Protein synthesis factor, GTP-binding 1.1E-25
Pfam IPR007379 EMBL-EBI Mitochondrial import inner membrane translocase, subunit Tim44 1.0E-15
Pfam IPR005517 EMBL-EBI Elongation factor G, domain IV 0.0020
Pfam IPR007834 EMBL-EBI DSS1/SEM1 6.0E-11
Pfam IPR004161 EMBL-EBI Elongation factor Tu, domain 2 7.0E-5
Sequence
Target Sequence 
>C. ELEGANS:171913_X_AT
aaaatgctccgaatcacgtgtgccacctcgggctcccgctgaaacacgcnnnnngcggac
ccagggagcttcctgagccaccaaactgcagctatccgatgggnnnnnnnnnnnnnnnnn
nnnnncacgtcgtgtacgttcacaagcccaccagganacctccgggccgcaagttgcaga
gtactgggaccggacgcaggtctcaaagtccgcaaaagcctggcacaggctggatggggt
cttcaaaatttccgcgtcatactgcttc

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAATGCTCCGAATCACGTGTGCCA 462 131 17 Antisense
CCACCAAACTGCAGCTATCCGATGG 454 271 94 Antisense
CTCCGGGCCGCAAGTTGCAGAGTAC 358 231 176 Antisense
GTTGCAGAGTACTGGGACCGGACGC 252 437 189 Antisense
TACTGGGACCGGACGCAGGTCTCAA 401 645 198 Antisense
GGACCGGACGCAGGTCTCAAAGTCC 138 521 203 Antisense
CGCAGGTCTCAAAGTCCGCAAAAGC 281 255 211 Antisense
CAAAGTCCGCAAAAGCCTGGCACAG 103 193 220 Antisense
GCCTGGCACAGGCTGGATGGGGTCT 455 283 234 Antisense
GATGGGGTCTTCAAAATTTCCGCGT 74 403 249 Antisense
CAAAATTTCCGCGTCATACTGCTTC 149 191 260 Antisense
Sequence Source Affymetrix Proprietary Database