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[171911_x_at]

Description AV182650_rc /REP_DB=TREMBL Accession /GB=AV182650 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk640g6 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 96      6grp_high1_10_10 > 68      4grp_highest_8_8 > 23      4grp_high_8_8 > 06      6grp_highest_nonorm > 82      6grp_total > 69      4grp_total > 02      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2000
1 2 3 4 range
A 735.3
(-2.1)
P 		468
(-3)
P 		515.9
(-2.8)
P 		2199
(3)
P 		1731
B 499.1
(-2.6)
P 		382.2
(-3)
P 		385.8
(-3)
P 		2382.1
(3)
P 		2000
C 556.4
(-2.4)
P 		389.6
(-3)
P 		562.1
(-2.3)
P 		1956.9
(3)
P 		1567
avr 596.9
(-2.4) 		413.3
(-3) 		487.9
(-2.7) 		2179.3
(3) 		1766

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 382
1 2 3 4 5 6 range
A 341.4
(-0.1)
P 		326.6
(-0.5)
P 		222.1
(-3)
P 		257.1
(-2.2)
P 		352.8
(0.2)
P 		470.7
(3)
P 		249
B 387.4
(-0.5)
P 		379.3
(-0.7)
P 		330.6
(-1.4)
P 		235.2
(-3)
P 		384.5
(-0.6)
P 		603.8
(3)
P 		369
C 392.9
(-0.4)
P 		330.5
(-1.6)
P 		274.1
(-2.7)
P 		257.3
(-3)
P 		394.8
(-0.4)
P 		573.2
(3)
P 		316
avr 373.9
(-0.5) 		345.5
(-1.1) 		275.6
(-2.5) 		249.9
(-3) 		377.4
(-0.4) 		549.2
(3) 		299
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 418
1 2 3 4 range
A 267.7
(1.5)
P 		101.6
(-3)
P 		134.9
(-2.1)
P 		321.9
(3)
P 		220
B 159.2
(-2)
P 		94.4
(-2.9)
P 		89.4
(-3)
P 		507.6
(3)
P 		418
C 184.2
(-1)
P 		112
(-3)
P 		195.9
(-0.7)
P 		330
(3)
P 		218
avr 203.7
(-0.9) 		102.7
(-3) 		140.1
(-2.2) 		386.5
(3) 		284

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 177
1 2 3 4 5 6 range
A 62.9
(-1.7)
P 		116.1
(3)
P 		48.4
(-3)
P 		65.2
(-1.5)
P 		106.5
(2.1)
P 		114.6
(2.9)
P 		68
B 134.8
(-0.3)
P 		126.3
(-0.6)
P 		80.3
(-2.3)
P 		62.3
(-3)
P 		156.2
(0.5)
P 		225.2
(3)
P 		163
C 145.6
(1)
P 		100.8
(-0.9)
P 		69.8
(-2.2)
P 		51.7
(-3)
P 		127.8
(0.3)
P 		191.9
(3)
P 		140
avr 114.4
(-0.2) 		114.4
(-0.2) 		66.2
(-2.7) 		59.7
(-3) 		130.2
(0.6) 		177.2
(3) 		118
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171911_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27886
Sequence Type Exemplar sequence
Representative Public ID AV182650 NCBI
Target Description AV182650_rc /REP_DB=TREMBL Accession /GB=AV182650 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk640g6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073974(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073974 NCBI Caenorhabditis elegans F53F4.11 (F53F4.11) mRNA, complete cds. 11/11 A 
F53F4.11.1 ENSEMBL cdna:known chromosome:CEL140:V:13624568:13627113:-1 gene:F53F4.11 11/11 A 
F53F4.11.2 ENSEMBL cdna:known chromosome:CEL140:V:13624568:13627117:-1 gene:F53F4.11 11/11 A 
F53F4.11.3 ENSEMBL cdna:known chromosome:CEL140:V:13624697:13627116:-1 gene:F53F4.11 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000012446 8/11 Cross Hyb Matching Probes None
GENEFINDER00000012452 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13624855-13625068(-) 69.61 69.61
Public Domain and Genome References
Gene Title
Ensembl F53F4.11
Entrez Gene 179849 Entrez gene
SwissProt Q20720 EMBL-EBI
WormBase CE20849 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1631636_AT dm
DROSGENOME1:142984_AT dm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6412 protein biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
5840 ribosome inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3735 structural constituent of ribosome inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB01204 Hypothetical protein F53F4.11 [Caenorhabditis elegans] ref|NP_506375.1| F53F4.11 [Caenorhabditis elegans] 0.0
blast CAE66275 Hypothetical protein CBG11519 [Caenorhabditis briggsae] 1.0E-170
blast AAW25731 SJCHGC05614 protein [Schistosoma japonicum] 2.0E-18
Sequence
Target Sequence 
>C. ELEGANS:171911_X_AT
tgaagccaaagatcgatccagcaaaggtcnnnnnnnnnnnnnnnnnnnnnnncaagggca
aggatatcgttaagaagcagatcaagaagcgtttggaaaagaagttgaagagagccgctg
atggtccaatcaacacaattgttaccaagaaagtcaagaaaaccgcttaatatatctctt
gtcggaaaattatgaaatattccatcattttc

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAAGCCAAAGATCGATCCAGCAAA 22 575 14 Antisense
GCCAAAGATCGATCCAGCAAAGGTC 643 277 18 Antisense
AGGGCAAGGATATCGTTAAGAAGCA 178 59 68 Antisense
GAAGCAGATCAAGAAGCGTTTGGAA 467 341 87 Antisense
AAGAAGTTGAAGAGAGCCGCTGATG 222 153 112 Antisense
GAAGAGAGCCGCTGATGGTCCAATC 301 339 120 Antisense
AGCCGCTGATGGTCCAATCAACACA 155 83 126 Antisense
GGTCCAATCAACACAATTGTTACCA 123 503 136 Antisense
AAAACCGCTTAATATATCTCTTGTC 699 129 172 Antisense
ATATATCTCTTGTCGGAAAATTATG 11 21 183 Antisense
AATTATGAAATATTCCATCATTTTC 379 175 201 Antisense
Sequence Source Affymetrix Proprietary Database