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[171910_x_at]

Description AV184312_rc /REP_DB=TREMBL Accession /GB=AV184312 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk662g3 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 61      6grp_high1_10_10 > 26      4grp_highest_8_8 > 0      4grp_high_8_8 > 36      6grp_highest_nonorm > 06      6grp_total > 16      4grp_total > 44      6grp_highest_sub > De      6grp_cgc > 05      6grp_high1_sub > De      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6204
1 2 3 4 range
A 10090.5
(-0.4)
P 		13319
(3)
P 		8921.8
(-1.6)
P 		7623.2
(-3)
P 		5696
B 10297.7
(0.8)
P 		11499
(3)
P 		8268.8
(-3)
P 		8417.2
(-2.7)
P 		3230
C 9386
(0.2)
P 		11407.5
(3)
P 		9251.5
(-0)
P 		7115.4
(-3)
P 		4292
avr 9924.7
(0) 		12075.2
(3) 		8814
(-1.5) 		7718.6
(-3) 		4357

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9915
1 2 3 4 5 6 range
A 15787.2
(3)
P 		10790.4
(-0)
P 		7585.1
(-2)
P 		5872.1
(-3)
P 		7259
(-2.2)
P 		8783.2
(-1.2)
P 		9915
B 13255.1
(3)
P 		11608.9
(1.5)
P 		8582.3
(-1.2)
P 		6975.5
(-2.7)
P 		6641.4
(-3)
P 		8374.3
(-1.4)
P 		6614
C 12774.4
(3)
P 		11100.5
(1.5)
P 		8618.1
(-0.8)
P 		6260.5
(-3)
P 		7650.6
(-1.7)
P 		7609.7
(-1.8)
P 		6514
avr 13938.9
(3) 		11166.6
(0.8) 		8261.8
(-1.5) 		6369.4
(-3) 		7183.7
(-2.4) 		8255.7
(-1.5) 		7570
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2558
1 2 3 4 range
A 3673.9
(3)
P 		2891.2
(1.2)
P 		2332.3
(-0.1)
P 		1115.9
(-3)
P 		2558
B 3283.9
(3)
P 		2840
(1.2)
P 		1916.1
(-2.5)
P 		1793.7
(-3)
P 		1490
C 3107
(2.5)
P 		3279.7
(3)
P 		3224.4
(2.8)
P 		1199.8
(-3)
P 		2080
avr 3354.9
(3) 		3003.6
(1.9) 		2490.9
(0.4) 		1369.8
(-3) 		1985

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3476
1 2 3 4 5 6 range
A 2910.2
(0.6)
P 		3837.6
(3)
P 		1651.9
(-2.6)
P 		1489.3
(-3)
P 		2190.5
(-1.2)
P 		2138.4
(-1.3)
P 		2348
B 4612.1
(3)
P 		3864.1
(1.4)
P 		2084
(-2.5)
P 		1847.6
(-3)
P 		2698.3
(-1.2)
P 		3122.7
(-0.2)
P 		2765
C 4734.9
(3)
P 		3387.1
(0.7)
P 		2193.4
(-1.4)
P 		1259
(-3)
P 		2475.6
(-0.9)
P 		2547.4
(-0.8)
P 		3476
avr 4085.7
(3) 		3696.3
(2.1) 		1976.4
(-2) 		1532
(-3) 		2454.8
(-0.8) 		2602.8
(-0.5) 		2554
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171910_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27833
Sequence Type Exemplar sequence
Representative Public ID AV184312 NCBI
Target Description AV184312_rc /REP_DB=TREMBL Accession /GB=AV184312 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk662g3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063571(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063571 NCBI Caenorhabditis elegans AQuaPorin or aquaglyceroporin related family member (aqp-2) (aqp-2) mRNA, complete cds. 9/11 A 
C01G6.1a.2 ENSEMBL cdna:known chromosome:CEL140:II:9258824:9261884:-1 gene:C01G6.1 9/11 A 
C01G6.1a.1 ENSEMBL cdna:known chromosome:CEL140:II:9258961:9261884:-1 gene:C01G6.1 9/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_063572 8/11 Cross Hyb Matching Probes A 
SNAP00000013214 2/11 Cross Hyb Matching Probes None
GENEFINDER00000013240 4/11 Cross Hyb Matching Probes None
C01G6.1b.1 7/11 Cross Hyb Matching Probes A 
C01G6.1b.2 7/11 Cross Hyb Matching Probes A 
C01G6.1b.3 2/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
174467 2 1 NM_063571 171910_x_at (9)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9259017-9259618(-) 97.15 97.15
Public Domain and Genome References
Ensembl C01G6.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA84633 Hypothetical protein C01G6.1a [Caenorhabditis elegans] ref|NP_495972.1| AQuaPorin or aquaglyceroporin related family member (aqp-2) [Caenorhabditis elegans] 1.0E-151
blast CAA84642 Hypothetical protein C01G6.1b [Caenorhabditis elegans] ref|NP_495973.1| AQuaPorin or aquaglyceroporin related family member (aqp-2) [Caenorhabditis elegans] 1.0E-148
blast CAE57878 Hypothetical protein CBG00920 [Caenorhabditis briggsae] 1.0E-143
Protein Domains
Database ID Description E-Value
Pfam IPR000425 EMBL-EBI Major intrinsic protein 6.4E-48
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495972.1 6 16-38,53-75,96-118,152-174,187-209,232-254
C01G6.1a.2 6 16-38,53-75,96-118,152-174,187-209,232-254
C01G6.1a.1 6 16-38,53-75,96-118,152-174,187-209,232-254
Sequence
Target Sequence 
>C. ELEGANS:171910_X_AT
tcaccggaaaccaggagctcaagccactcaccgccaaggaaactgtcgatgaagaagccg
cctaaacgattcgaccaatattcaatgctaccatcctgcctccaaactttctttcttcgc
tatctcgtataaangnaanacatanngacaatcgganatcacnnaaattgataattttgc
tagctttcgannnnngaaatcctttctcaccctgatcaaaccnnnnnccaagannnnnnn
gaaaataaggaactgcgtaaagtttcaaat

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCACCGGAAACCAGGAGCTCAAGCC 536 595 13 Antisense
CGGAAACCAGGAGCTCAAGCCACTC 242 243 17 Antisense
CCACTCACCGCCAAGGAAACTGTCG 428 273 36 Antisense
GAAACTGTCGATGAAGAAGCCGCCT 506 357 51 Antisense
GAAGAAGCCGCCTAAACGATTCGAC 579 337 63 Antisense
AAGCCGCCTAAACGATTCGACCAAT 621 147 67 Antisense
GATTCGACCAATATTCAATGCTACC 675 431 80 Antisense
CAATATTCAATGCTACCATCCTGCC 437 181 88 Antisense
TTTCTTTCTTCGCTATCTCGTATAA 80 673 120 Antisense
AATTGATAATTTTGCTAGCTTTCGA 446 177 178 Antisense
TAAGGAACTGCGTAAAGTTTCAAAT 491 637 258 Antisense
Sequence Source Affymetrix Proprietary Database