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[171909_s_at]

Description AV199747_rc /REP_DB=TREMBL Accession /GB=AV199747 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk551b2 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 64      6grp_high1_10_10 > 56      4grp_highest_8_8 > 30      4grp_high_8_8 > 05      6grp_highest_nonorm > 74      6grp_total > 46      4grp_total > 03      6grp_highest_sub > Cu      6grp_high1_sub > Cu      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3865
1 2 3 4 range
A 910.7
(-2.1)
P 		420.3
(-3)
P 		409.8
(-3)
P 		3615.2
(3)
P 		3205
B 924.4
(-2.1)
P 		345.1
(-3)
P 		461.3
(-2.8)
P 		4209.7
(3)
P 		3865
C 866.1
(-2)
P 		355.6
(-3)
P 		624.8
(-2.5)
P 		3363
(3)
P 		3007
avr 900.4
(-2.1) 		373.7
(-3) 		498.6
(-2.8) 		3729.3
(3) 		3356

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 441
1 2 3 4 5 6 range
A 565.4
(-2.5)
P 		805.2
(3)
P 		588.5
(-1.9)
P 		685.6
(0.3)
P 		542
(-3)
P 		758.1
(1.9)
P 		263
B 724.8
(1.1)
P 		815.9
(3)
P 		678.7
(0.1)
P 		634.6
(-0.8)
P 		528.2
(-3)
P 		811
(2.9)
P 		288
C 890.5
(1.5)
P 		726.7
(-1.6)
P 		700.8
(-2)
P 		650.3
(-3)
P 		650.1
(-3)
P 		969.3
(3)
P 		319
avr 726.9
(0.4) 		782.6
(1.6) 		656
(-1.2) 		656.8
(-1.2) 		573.4
(-3) 		846.1
(3) 		273
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 812
1 2 3 4 range
A 331.6
(0.3)
P 		91.2
(-3)
P 		107.1
(-2.8)
P 		529.2
(3)
P 		438
B 294.8
(-1.5)
P 		85.2
(-3)
P 		106.9
(-2.8)
P 		897.1
(3)
P 		812
C 286.7
(-0.6)
P 		102.2
(-3)
P 		217.8
(-1.5)
P 		567.1
(3)
P 		465
avr 304.4
(-0.8) 		92.9
(-3) 		143.9
(-2.5) 		664.5
(3) 		572

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 226
1 2 3 4 5 6 range
A 104.2
(-3)
P 		286.4
(3)
P 		128.2
(-2.2)
P 		173.9
(-0.7)
P 		163.6
(-1)
P 		184.6
(-0.4)
P 		182
B 252.2
(0.8)
P 		271.6
(1.7)
P 		164.8
(-3)
P 		168.1
(-2.9)
P 		214.6
(-0.8)
P 		302.4
(3)
P 		138
C 330.1
(3)
P 		221.7
(-0.3)
P 		178.4
(-1.6)
P 		130.8
(-3)
P 		210.4
(-0.6)
P 		324.5
(2.8)
P 		199
avr 228.8
(0.8) 		259.9
(2.4) 		157.1
(-3) 		157.6
(-3) 		196.2
(-0.9) 		270.5
(3) 		113
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171909_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27811
Sequence Type Exemplar sequence
Representative Public ID AV199747 NCBI
Target Description AV199747_rc /REP_DB=TREMBL Accession /GB=AV199747 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk551b2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028487(11), NM_001028488(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028487 NCBI Caenorhabditis elegans C14C10.3a (C14C10.3) mRNA, complete cds. 11/11 None
NM_001028488 NCBI Caenorhabditis elegans C14C10.3b (C14C10.3) mRNA, complete cds. 11/11 None
SNAP00000017652 ENSEMBL cdna:SNAP chromosome:CEL140:V:12599138:12601668:-1 11/11 None
GENEFINDER00000017660 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12599138:12601668:-1 11/11 None
C14C10.3.1 ENSEMBL cdna:known chromosome:CEL140:V:12598989:12601740:-1 gene:C14C10.3 11/11 None
C14C10.3.2 ENSEMBL cdna:known chromosome:CEL140:V:12598997:12601742:-1 gene:C14C10.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12599120-12599310(-) 61.36 61.36
Public Domain and Genome References
Ensembl C14C10.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA98427 Hypothetical protein C14C10.3a [Caenorhabditis elegans] ref|NP_001023658.1| C14C10.3a [Caenorhabditis elegans] 0.0
blast CAI91174 Hypothetical protein C14C10.3b [Caenorhabditis elegans] ref|NP_001023659.1| C14C10.3b [Caenorhabditis elegans] 0.0
blast CAE75521 Hypothetical protein CBG23539 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:171909_S_AT
tccaccgagttgatgaagaacagttgcatgaactatgcaaggcaattcaaagtgattgga
ttcagtgctctgactcgaaagaatcgttagaacgtcttttcgcgtggtgccaaacaaatc
gagtcgaagttgatcaaagagctcaaaagaaactatcttctttcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCACCGAGTTGATGAAGAACAGTT 671 587 60 Antisense
GCATGAACTATGCAAGGCAATTCAA 289 311 85 Antisense
TTGGATTCAGTGCTCTGACTCGAAA 648 705 115 Antisense
CAGTGCTCTGACTCGAAAGAATCGT 48 209 122 Antisense
AATCGTTAGAACGTCTTTTCGCGTG 413 165 141 Antisense
TTAGAACGTCTTTTCGCGTGGTGCC 584 681 146 Antisense
GTCTTTTCGCGTGGTGCCAAACAAA 337 467 153 Antisense
CGCGTGGTGCCAAACAAATCGAGTC 316 251 160 Antisense
GGTGCCAAACAAATCGAGTCGAAGT 104 493 165 Antisense
CGAGTCGAAGTTGATCAAAGAGCTC 110 249 179 Antisense
GCTCAAAAGAAACTATCTTCTTTCC 161 301 200 Antisense
Sequence Source Affymetrix Proprietary Database