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[171908_x_at]

Description AV182889_rc /REP_DB=TREMBL Accession /GB=AV182889 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk644a1 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 24      6grp_high1_10_10 > 31      4grp_highest_8_8 > 16      4grp_high_8_8 > 52      6grp_highest_nonorm > 24      6grp_total > 42      4grp_total > 59      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2812
1 2 3 4 range
A 3069.4
(-1.5)
P 		3949.7
(3)
P 		2786
(-3)
P 		3157.3
(-1.1)
P 		1164
B 3912.9
(0.2)
P 		4243.2
(0.9)
P 		5146
(3)
P 		2515.2
(-3)
P 		2631
C 3116.8
(1.3)
P 		3382.1
(2.7)
P 		3433.3
(3)
P 		2334
(-3)
P 		1099
avr 3366.4
(0.5) 		3858.3
(3) 		3788.4
(2.6) 		2668.8
(-3) 		1190

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3435
1 2 3 4 5 6 range
A 3547.4
(-0.2)
P 		3830.3
(0.5)
P 		4922.4
(3)
P 		3137.9
(-1.1)
P 		2623
(-2.3)
P 		2333.6
(-3)
P 		2589
B 3207.2
(-1.8)
P 		3595.3
(-1.1)
P 		5768.7
(3)
P 		3327.1
(-1.6)
P 		2955.4
(-2.3)
P 		2568.2
(-3)
P 		3201
C 3132.7
(0.7)
P 		3552
(3)
P 		3371.1
(2)
P 		3034.6
(0.1)
P 		2894.8
(-0.6)
P 		2463.1
(-3)
P 		1089
avr 3295.8
(-0.7) 		3659.2
(0.2) 		4687.4
(3) 		3166.5
(-1.1) 		2824.4
(-2) 		2455
(-3) 		2232
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 854
1 2 3 4 range
A 1117.6
(3)
P 		857.4
(0.6)
P 		728.3
(-0.6)
P 		462.2
(-3)
P 		655
B 1247.8
(3)
P 		1048
(1.3)
P 		1192.4
(2.5)
P 		536
(-3)
P 		712
C 1031.7
(1.8)
P 		972.4
(1.3)
P 		1196.6
(3)
P 		393.5
(-3)
P 		803
avr 1132.4
(3) 		959.3
(1.4) 		1039.1
(2.2) 		463.9
(-3) 		669

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 833
1 2 3 4 5 6 range
A 653.9
(-2.4)
P 		1362.2
(3)
P 		1072
(0.8)
P 		795.8
(-1.3)
P 		791.5
(-1.3)
P 		568.2
(-3)
P 		794
B 1115.9
(-0.3)
P 		1196.7
(0.6)
P 		1400.8
(3)
P 		881.2
(-3)
P 		1200.8
(0.7)
P 		957.7
(-2.1)
P 		520
C 1161.1
(3)
P 		1083.8
(2.2)
P 		858
(-0.3)
P 		610.3
(-3)
P 		936.7
(0.6)
P 		824.5
(-0.7)
P 		551
avr 977
(-0.2) 		1214.2
(3) 		1110.3
(1.6) 		762.4
(-3) 		976.3
(-0.2) 		783.5
(-2.7) 		452
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171908_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27784
Sequence Type Exemplar sequence
Representative Public ID AV182889 NCBI
Target Description AV182889_rc /REP_DB=TREMBL Accession /GB=AV182889 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk644a1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064023
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000040220 ENSEMBL cdna:SNAP chromosome:CEL140:II:11343774:11345521:-1 None
NM_064023 NCBI Caenorhabditis elegans B0491.5 (B0491.5) mRNA, complete cds. A 
B0491.5.1 ENSEMBL cdna:known chromosome:CEL140:II:11343628:11345526:-1 gene:B0491.5 A 
B0491.5.2 ENSEMBL cdna:known chromosome:CEL140:II:11343629:11345532:-1 gene:B0491.5 A 
GENEFINDER00000040230 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11343774:11345521:-1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11343682-11344516(-) 96.88 96.88
Public Domain and Genome References
Gene Title
Ensembl B0491.5
Entrez Gene 174734 Entrez gene
SwissProt Q17512 EMBL-EBI
WormBase CE02107 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90087 Hypothetical protein B0491.5 [Caenorhabditis elegans] ref|NP_496424.1| B0491.5 [Caenorhabditis elegans] 0.0
blast CAE59526 Hypothetical protein CBG02921 [Caenorhabditis briggsae] 1.0E-177
Sequence
Target Sequence 
>C. ELEGANS:171908_X_AT
ctgttggatcaaccgtggctaccatgaagagcaacgttgcccttggaaccactgccgcca
ttttcaccgccatcctcggagcattttggcagtatcaacgacactcggagactggactcc
aaggaatgactgctcatccacaatttgccggaatttggggaggaccacttctttggcaga
agatgcaacttggaaatgccgatgttccgaccacacgatactgattgganttttgaannn
nnnctagcttcgattttacaatcatgta

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTGTTGGATCAACCGTGGCTACCAT 384 237 17 Antisense
GAAGAGCAACGTTGCCCTTGGAACC 615 337 42 Antisense
CCGCCATCCTCGGAGCATTTTGGCA 97 263 83 Antisense
TTTGGCAGTATCAACGACACTCGGA 221 667 101 Antisense
GACACTCGGAGACTGGACTCCAAGG 480 357 116 Antisense
GGACTCCAAGGAATGACTGCTCATC 293 525 130 Antisense
ACTGCTCATCCACAATTTGCCGGAA 79 99 145 Antisense
TTTGGGGAGGACCACTTCTTTGGCA 377 667 170 Antisense
TGGAAATGCCGATGTTCCGACCACA 653 547 207 Antisense
GTTCCGACCACACGATACTGATTGG 561 441 220 Antisense
CTAGCTTCGATTTTACAATCATGTA 131 223 260 Antisense
Sequence Source Affymetrix Proprietary Database