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[171907_x_at]

Description AV176498_rc /REP_DB=TREMBL Accession /GB=AV176498 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk514a2 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 49      6grp_total > 39      4grp_total > 51      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 90
1 2 3 4 range
A 61
(-2.1)
P 		113.7
(3)
P 		79
(-0.3)
M 		51.1
(-3)
A 		63
B 88.2
(0.1)
P 		124.4
(3)
A 		118.5
(2.5)
A 		50.7
(-3)
A 		74
C 70.5
(0.6)
M 		87.2
(2.3)
A 		93.6
(3)
P 		34.7
(-3)
A 		59
avr 73.2
(-0.4) 		108.4
(3) 		97
(1.9) 		45.5
(-3) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 149
1 2 3 4 5 6 range
A 99.4
(-2.1)
P 		102.9
(-1.8)
P 		94.1
(-2.7)
P 		90.9
(-3)
P 		130.3
(1)
A 		150.5
(3)
P 		60
B 59.5
(-2)
P 		99.6
(2.4)
P 		50.3
(-3)
P 		104.7
(3)
P 		67.7
(-1.1)
P 		75.3
(-0.2)
P 		54
C 199.1
(3)
P 		97
(-1.2)
P 		131.6
(0.3)
M 		51.5
(-3)
A 		139
(0.6)
P 		116.3
(-0.4)
P 		148
avr 119.3
(3) 		99.8
(-0.2) 		92
(-1.4) 		82.4
(-3) 		112.3
(1.9) 		114
(2.1) 		37
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 22.2
(2.1)
P 		24.7
(3)
P 		20.7
(1.6)
M 		7.5
(-3)
A 		17
B 28.1
(2.2)
P 		30.7
(3)
A 		27.5
(2)
A 		10.8
(-3)
A 		20
C 23.3
(0.9)
M 		25.1
(1.3)
A 		32.6
(3)
P 		5.8
(-3)
A 		27
avr 24.5
(2.2) 		26.8
(3) 		26.9
(3) 		8
(-3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 18.3
(-3)
P 		36.6
(2.2)
P 		20.5
(-2.4)
P 		23
(-1.7)
P 		39.3
(3)
A 		36.6
(2.2)
P 		21
B 20.7
(-0.6)
P 		33.2
(3)
P 		12.2
(-3)
P 		27.7
(1.4)
P 		27.5
(1.4)
P 		28.1
(1.5)
P 		21
C 73.8
(3)
P 		29.6
(-1.2)
P 		33.5
(-0.8)
M 		10.4
(-3)
A 		45
(0.3)
P 		38.9
(-0.3)
P 		63
avr 37.6
(3) 		33.1
(1.4) 		22.1
(-2.4) 		20.4
(-3) 		37.3
(2.9) 		34.5
(1.9) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171907_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27777
Sequence Type Exemplar sequence
Representative Public ID AV176498 NCBI
Target Description AV176498_rc /REP_DB=TREMBL Accession /GB=AV176498 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk514a2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a UniGene identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) AV176498
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
AV176498 AV176498_rc /REP_DB=TREMBL Accession /GB=AV176498 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk514a2 : 3prime end, single read. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001026479 7/11 Cross Hyb Matching Probes None
NM_001026478 7/11 Cross Hyb Matching Probes None
W02B9.1b 7/11 Cross Hyb Matching Probes A 
W02B9.1a 7/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11073655-11073906(+) 62.46 62.46
Sequence
Target Sequence 
>C. ELEGANS:171907_X_AT
ctatcctataacaatcccagaattgctttcgaaattcattacacacacacactgctcatn
nnnnnnnnnnnnnnnnnnnnnnacaagtacctctactactacnnnnnngagcgaaatttc
acttatatatatgtctatttatatgtatttcctgttacccgtttccctcttgccaccncc
acgtcttggtctcgnttnnanncgtttnntgctgagcatctcctcattctgaacgggatt
ccatatatcgctcc

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTATCCTATAACAATCCCAGAATTG 427 223 46 Antisense
AACAATCCCAGAATTGCTTTCGAAA 579 133 55 Antisense
ATTGCTTTCGAAATTCATTACACAC 255 7 67 Antisense
AATTCATTACACACACACACTGCTC 15 177 78 Antisense
GCGAAATTTCACTTATATATATGTC 462 289 156 Antisense
ATGTCTATTTATATGTATTTCCTGT 193 49 176 Antisense
TATATGTATTTCCTGTTACCCGTTT 457 659 185 Antisense
AGCATCTCCTCATTCTGAACGGGAT 6 79 260 Antisense
ATCTCCTCATTCTGAACGGGATTCC 469 33 263 Antisense
CCTCATTCTGAACGGGATTCCATAT 52 269 267 Antisense
TGAACGGGATTCCATATATCGCTCC 636 573 275 Antisense
Sequence Source Affymetrix Proprietary Database