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[171906_x_at] Human KIIAA0174 protein like

Description AV176821_rc /REP_DB=TREMBL Accession /GB=AV176821 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk518h3 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 90      6grp_high1_10_10 > 91      4grp_highest_8_8 > 35      4grp_high_8_8 > 56      6grp_highest_nonorm > 73      6grp_total > 93      4grp_total > 63      6grp_high1_sub > 05      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 375
1 2 3 4 range
A 546.3
(3)
P 		171.5
(-3)
P 		494.1
(2.2)
P 		499.4
(2.2)
P 		375
B 354.7
(-2.2)
P 		468.7
(3)
P 		382.5
(-0.9)
P 		336.1
(-3)
P 		133
C 540.7
(3)
P 		513.9
(1.8)
P 		500.1
(1.2)
P 		402.6
(-3)
P 		138
avr 480.6
(3) 		384.7
(-3) 		458.9
(1.6) 		412.7
(-1.2) 		96

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 309
1 2 3 4 5 6 range
A 381.8
(-3)
P 		486.7
(-0)
P 		528.1
(1.1)
P 		493.4
(0.2)
P 		594
(3)
P 		498.4
(0.3)
P 		212
B 631.6
(1.8)
P 		570.6
(-2.7)
P 		616
(0.7)
P 		565.9
(-3)
P 		647.9
(3)
P 		579.3
(-2)
P 		82
C 690.7
(3)
P 		535.8
(-1.6)
P 		509.9
(-2.4)
P 		489.5
(-3)
P 		649.8
(1.8)
P 		509
(-2.4)
P 		201
avr 568
(-0.3) 		531
(-2.2) 		551.3
(-1.2) 		516.3
(-3) 		630.6
(3) 		528.9
(-2.3) 		114
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 162
1 2 3 4 range
A 198.9
(3)
P 		37.2
(-3)
P 		129.2
(0.4)
P 		73.1
(-1.7)
P 		162
B 113.1
(2.6)
P 		115.8
(3)
P 		88.6
(-0.7)
P 		71.6
(-3)
P 		44
C 179
(3)
P 		147.8
(1.3)
P 		174.3
(2.7)
P 		67.9
(-3)
P 		111
avr 163.7
(3) 		100.3
(-1.1) 		130.7
(0.9) 		70.9
(-3) 		93

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 193
1 2 3 4 5 6 range
A 70.4
(-3)
P 		173.1
(2.7)
P 		115
(-0.5)
P 		125.1
(0)
P 		179.2
(3)
P 		121.3
(-0.2)
P 		109
B 219.8
(0.7)
P 		189.9
(-0.9)
P 		149.6
(-3)
P 		149.9
(-3)
P 		263.2
(3)
P 		216
(0.5)
P 		114
C 256
(3)
P 		163.5
(-0.5)
P 		129.8
(-1.8)
P 		98.4
(-3)
P 		210.3
(1.3)
P 		170.4
(-0.3)
P 		158
avr 182.1
(0.7) 		175.5
(0.3) 		131.5
(-2.5) 		124.5
(-3) 		217.6
(3) 		169.2
(-0.1) 		93
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171906_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28008
Sequence Type Exemplar sequence
Representative Public ID AV176821 NCBI
Target Description AV176821_rc /REP_DB=TREMBL Accession /GB=AV176821 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk518h3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073769
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
K10C8.3.3 ENSEMBL cdna:known chromosome:CEL140:V:12700442:12706863:1 gene:K10C8.3 None
K10C8.3.1 ENSEMBL cdna:known chromosome:CEL140:V:12700448:12706863:1 gene:K10C8.3 None
NM_073769 NCBI Caenorhabditis elegans K10C8.3 (K10C8.3) mRNA, complete cds. A 
SNAP00000040848 ENSEMBL cdna:SNAP chromosome:CEL140:V:12706045:12706636:1 None
GENEFINDER00000040860 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12706045:12706636:1 None
K10C8.3.2 ENSEMBL cdna:known chromosome:CEL140:V:12700405:12706863:1 gene:K10C8.3 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12706502-12706795(+) 90.06 90.06
Public Domain and Genome References
Gene Title Human KIIAA0174 protein like
Ensembl K10C8.3
Entrez Gene 179737 Entrez gene
SwissProt Q21414 EMBL-EBI
WormBase CE31969 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:266685_AT expressed protein at
CANINE:1605630_X_AT similar to Protein KIAA0174 cfa
CANINE:1595743_AT similar to Protein KIAA0174 cfa
CANINE:1590297_X_AT similar to Protein KIAA0174 cfa
CANINE_2:CFA.12847.1.A1_AT similar to Protein KIAA0174 cfa
CANINE_2:CFA.13058.1.A1_AT similar to Protein KIAA0174 cfa
CANINE_2:CFA.13058.1.A1_X_AT similar to Protein KIAA0174 cfa
CANINE_2:CFAAFFX.30963.1.S1_S_AT similar to Protein KIAA0174 cfa
CANINE_2:CFAAFFX.30964.1.S1_S_AT similar to Protein KIAA0174 cfa
CANINE_2:CFAAFFX.30964.1.S1_X_AT similar to Protein KIAA0174 cfa
CANINE_2:CFAAFFX.30965.1.S1_AT similar to Protein KIAA0174 cfa
DROSOPHILA_2:1636812_AT dm
DROSGENOME1:153798_AT dm
CHICKEN:GGAAFFX.22202.3.S1_S_AT similar to CG10103-PA gga
HG-U133A:200851_S_AT KIAA0174 hs
HG-U133_PLUS_2:200851_S_AT KIAA0174 hs
HG-U133A_2:200851_S_AT KIAA0174 hs
HU35KSUBD:RC_R16097_S_AT KIAA0174 hs
HUGENEFL:D79996_AT KIAA0174 hs
U133_X3P:G7661971_3P_A_AT KIAA0174 hs
HG-U95AV2:36942_AT KIAA0174 hs
U133_X3P:HS.287613.0.S1_3P_AT KIAA0174 hs
HG-U133A_2:215585_AT KIAA0174 hs
HG-U133_PLUS_2:215585_AT KIAA0174 hs
HG-U133A:215585_AT KIAA0174 hs
HG-U133_PLUS_2:244594_X_AT KIAA0174 hs
HG-U133B:244594_X_AT KIAA0174 hs
HG-U95D:69616_AT KIAA0174 hs
HG-U95D:74200_R_AT KIAA0174 hs
HG-U95D:89366_AT KIAA0174 hs
U133_X3P:HS.232194.0.A1_3P_AT KIAA0174 hs
MG-U74AV2:96669_AT RIKEN cDNA 2400003C14 gene mm
MOE430A:1423838_S_AT RIKEN cDNA 2400003C14 gene mm
MOUSE430A_2:1423838_S_AT RIKEN cDNA 2400003C14 gene mm
MOUSE430_2:1423838_S_AT RIKEN cDNA 2400003C14 gene mm
MOE430A:1423837_AT RIKEN cDNA 2400003C14 gene mm
MOUSE430A_2:1423837_AT RIKEN cDNA 2400003C14 gene mm
MOUSE430_2:1423837_AT RIKEN cDNA 2400003C14 gene mm
MU19KSUBB:TC33885_AT RIKEN cDNA 2400003C14 gene, mRNA (cDNA clone MGC:6464 IMAGE:2631157) mm
MU19KSUBB:TC33885_G_AT RIKEN cDNA 2400003C14 gene, mRNA (cDNA clone MGC:6464 IMAGE:2631157) mm
MU19KSUBB:TC33886_AT RIKEN cDNA 2400003C14 gene, mRNA (cDNA clone MGC:6464 IMAGE:2631157) mm
RG-U34C:RC_AI235630_AT similar to RIKEN cDNA 2400003C14 (predicted) rn
RAE230A:1388412_AT similar to RIKEN cDNA 2400003C14 (predicted) rn
RAT230_2:1388412_AT similar to RIKEN cDNA 2400003C14 (predicted) rn
YEAST_2:1771112_AT Putative translation initiation factor, as suggested by computational analysis of large-scale protein-protein interaction data Sc
Protein Similarities
Method ID Description E-Value
blast CAA99907 Hypothetical protein K10C8.3 [Caenorhabditis elegans] emb|CAA98956.2| Hypothetical protein K10C8.3 [Caenorhabditis elegans] ref|NP_506170.2| K10C8.3 [Caenorhabditis elegans] 0.0
blast CAE63969 Hypothetical protein CBG08558 [Caenorhabditis briggsae] 1.0E-163
blast EAA11773 ENSANGP00000013507 [Anopheles gambiae str. PEST] ref|XP_315909.2| ENSANGP00000013507 [Anopheles gambiae str. PEST] 1.0E-59
Protein Domains
Database ID Description E-Value
Pfam IPR005061 EMBL-EBI Eukaryotic protein of unknown function DUF292 8.9E-76
Sequence
Target Sequence 
>C. ELEGANS:171906_X_AT
ttccgggcccacaagttaatttgtgggaggaaacaataagccaggggtcccaggggaaac
aacggaggaggtgctggaaatggtggattcgacgattttgatgatttggttccccgtttg
ggaggactggaaaagattaagtaatcatcacccgacgttccattccttattaactatttg
tttnnnnnnnnnnnnnnnnnnnnnnnnngtgtnnnnnnnngtatcataaatgagannnnn
naaaacgcctgtttcttgtgcatagcttaaaa

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCCGGGCCCACAAGTTAATTTGTG 215 697 22 Antisense
GAAACAATAAGCCAGGGGTCCCAGG 202 353 51 Antisense
GGGGAAACAACGGAGGAGGTGCTGG 60 487 74 Antisense
GAGGAGGTGCTGGAAATGGTGGATT 45 405 86 Antisense
GAAATGGTGGATTCGACGATTTTGA 639 361 98 Antisense
TTTTGATGATTTGGTTCCCCGTTTG 94 675 117 Antisense
ATTAAGTAATCATCACCCGACGTTC 706 11 157 Antisense
CGACGTTCCATTCCTTATTAACTAT 693 237 174 Antisense
TCCATTCCTTATTAACTATTTGTTT 448 591 180 Antisense
CGCCTGTTTCTTGTGCATAGCTTAA 391 257 267 Antisense
CCTGTTTCTTGTGCATAGCTTAAAA 679 265 269 Antisense
Sequence Source Affymetrix Proprietary Database