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[171905_x_at]

Description AU116226_rc /REP_DB=TREMBL Accession /GB=AU116226 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk742b4 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 02      6grp_high1_10_10 > 11      4grp_highest_8_8 > 40      4grp_high_8_8 > 50      6grp_highest_nonorm > 23      6grp_total > 32      4grp_total > 61      6grp_high1_sub > De      6grp_total_sub > Hat      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1710
1 2 3 4 range
A 2644.2
(3)
P 		2207.5
(1.4)
P 		1839.3
(0.1)
P 		960.2
(-3)
P 		1684
B 2125.5
(3)
P 		2099.2
(2.9)
P 		1947.2
(2)
P 		1053.5
(-3)
P 		1072
C 2463.8
(3)
P 		1840.5
(0.6)
P 		1980.3
(1.1)
P 		934.6
(-3)
P 		1529
avr 2411.2
(3) 		2049.1
(1.5) 		1922.3
(0.9) 		982.8
(-3) 		1428

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2633
1 2 3 4 5 6 range
A 2085.3
(0.3)
P 		2308.1
(0.9)
P 		3130.5
(3)
P 		2248.8
(0.8)
P 		1126.1
(-2.1)
P 		778.8
(-3)
P 		2352
B 3396.8
(3)
P 		2347.2
(0.6)
P 		2725.6
(1.5)
P 		2159
(0.2)
P 		1397
(-1.6)
P 		783.8
(-3)
P 		2613
C 3205.7
(3)
P 		2128.1
(0.4)
P 		2228.5
(0.6)
P 		2551.1
(1.4)
P 		1244.9
(-1.8)
P 		763.8
(-3)
P 		2442
avr 2895.9
(3) 		2261.1
(1.2) 		2694.9
(2.4) 		2319.6
(1.4) 		1256
(-1.6) 		775.5
(-3) 		2120
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 822
1 2 3 4 range
A 962.8
(3)
P 		479.2
(-0.5)
P 		480.8
(-0.5)
P 		140.6
(-3)
P 		822
B 677.8
(3)
P 		518.5
(0.9)
P 		451.2
(0)
P 		224.5
(-3)
P 		453
C 815.6
(3)
P 		529.1
(0.4)
P 		690.2
(1.9)
P 		157.6
(-3)
P 		658
avr 818.7
(3) 		508.9
(0.1) 		540.7
(0.4) 		174.2
(-3) 		645

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 999
1 2 3 4 5 6 range
A 384.4
(-1.1)
P 		820.9
(3)
P 		681.8
(1.7)
P 		570.4
(0.6)
P 		339.8
(-1.6)
P 		189.6
(-3)
P 		631
B 1181.9
(3)
P 		781.3
(0.3)
P 		661.9
(-0.5)
P 		571.8
(-1.1)
P 		567.6
(-1.1)
P 		292.3
(-3)
P 		890
C 1188.2
(3)
P 		649.4
(-0.5)
P 		567.2
(-1)
P 		513
(-1.3)
P 		402.8
(-2.1)
P 		255.7
(-3)
P 		933
avr 918.2
(3) 		750.5
(1.5) 		637
(0.5) 		551.7
(-0.3) 		436.7
(-1.3) 		245.9
(-3) 		672
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171905_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27772
Sequence Type Exemplar sequence
Representative Public ID AU116226 NCBI
Target Description AU116226_rc /REP_DB=TREMBL Accession /GB=AU116226 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk742b4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073441(11), NM_073442(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073441 NCBI Caenorhabditis elegans K10D6.2b (K10D6.2) mRNA, complete cds. 11/11 A 
NM_073442 NCBI Caenorhabditis elegans K10D6.2a (K10D6.2) mRNA, complete cds. 10/11 A 
K10D6.2b ENSEMBL cdna:known chromosome:CEL140:V:11196383:11198587:-1 gene:K10D6.2 11/11 A 
K10D6.2a ENSEMBL cdna:known chromosome:CEL140:V:11196390:11198587:-1 gene:K10D6.2 10/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_073443 8/11 Cross Hyb Matching Probes None
SNAP00000039397 1/11 Cross Hyb Matching Probes None
GENEFINDER00000039403 6/11 Cross Hyb Matching Probes None
K10D6.2c 8/11 Cross Hyb Matching Probes A 
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
179548 3 2 NM_073441 171905_x_at (11)
NM_073442 171905_x_at (10), 182010_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11196382-11196647(-) 87.75 87.75
Public Domain and Genome References
Ensembl K10D6.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA98514 Hypothetical protein K10D6.2a [Caenorhabditis elegans] ref|NP_505843.1| K10D6.2a [Caenorhabditis elegans] 0.0
blast CAA98513 Hypothetical protein K10D6.2b [Caenorhabditis elegans] ref|NP_505842.1| K10D6.2b [Caenorhabditis elegans] 1.0E-162
blast CAE75189 Hypothetical protein CBG23133 [Caenorhabditis briggsae] 1.0E-152
blast A89208 protein K10D6.2b [imported] - Caenorhabditis elegans 1.0E-147
blast CAA98513 Hypothetical protein K10D6.2b [Caenorhabditis elegans] ref|NP_505842.1| K10D6.2b [Caenorhabditis elegans] 1.0E-134
Protein Domains
Database ID Description E-Value
Pfam IPR010761 EMBL-EBI Clc-like 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505842.1 4 15-37,114-136,146-168,189-211
NP_505843.1 5 15-37,114-136,146-168,189-211,235-257
K10D6.2b 4 15-37,114-136,146-168,189-211
K10D6.2a 5 15-37,114-136,146-168,189-211,235-257
Sequence
Target Sequence 
>C. ELEGANS:171905_X_AT
catggcagcagcagacgcaaccagttactctcagcgtaaatgagcttccatacagaagag
aggagccattgctccacgacaaatttgtatcatcacaacaagccggctatcggccgaacc
cacaggttccatacagaacaaccagtataacccaatatcgtgagaccagtgcctaagatt
ttgttccatatttcacttattgttaactcttgcattttcgctcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATGGCAGCAGCAGACGCAACCAGT 403 209 13 Antisense
GACGCAACCAGTTACTCTCAGCGTA 173 381 26 Antisense
TCAGCGTAAATGAGCTTCCATACAG 405 625 43 Antisense
AGCCATTGCTCCACGACAAATTTGT 540 83 76 Antisense
TATCATCACAACAAGCCGGCTATCG 23 661 100 Antisense
GCCGAACCCACAGGTTCCATACAGA 571 283 125 Antisense
GAACAACCAGTATAACCCAATATCG 673 351 148 Antisense
ACCCAATATCGTGAGACCAGTGCCT 366 91 162 Antisense
GACCAGTGCCTAAGATTTTGTTCCA 329 383 176 Antisense
GATTTTGTTCCATATTTCACTTATT 456 429 189 Antisense
TGTTAACTCTTGCATTTTCGCTCAT 648 561 213 Antisense
Sequence Source Affymetrix Proprietary Database