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[171904_x_at]

Description AU115803_rc /REP_DB=TREMBL Accession /GB=AU115803 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk736h9 : 3prime end, single read.
Cluster 6grp_total > 66      4grp_total > 01      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 226
1 2 3 4 range
A 136.2
(-3)
A 		162.5
(-2.1)
A 		176.9
(-1.6)
A 		305.6
(3)
A 		169
B 122.3
(-3)
A 		127.9
(-2.7)
A 		196.9
(1.2)
A 		229.9
(3)
A 		108
C 222.3
(0.9)
A 		79.9
(-3)
A 		102
(-2.4)
A 		296.6
(3)
A 		217
avr 160.3
(-1.6) 		123.4
(-3) 		158.6
(-1.6) 		277.4
(3) 		154

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 218
1 2 3 4 5 6 range
A 5.6
(-3)
A 		23.2
(-2.3)
A 		165
(3)
A 		6
(-3)
A 		26.1
(-2.2)
A 		129
(1.6)
A 		159
B 31.6
(-2.3)
A 		13.3
(-3)
A 		56.5
(-1.4)
A 		57.3
(-1.4)
A 		43.3
(-1.9)
A 		178.2
(3)
A 		165
C 5
(-3)
A 		25.9
(-2.4)
A 		31.7
(-2.3)
A 		66.6
(-1.3)
A 		30.9
(-2.3)
A 		222.9
(3)
A 		218
avr 14.1
(-3) 		20.8
(-2.8) 		84.4
(-0.4) 		43.3
(-1.9) 		33.4
(-2.3) 		176.7
(3) 		163
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 49.6
(3)
A 		35.3
(-3)
A 		46.3
(1.6)
A 		44.7
(0.9)
A 		14
B 39
(-0.4)
A 		31.6
(-3)
A 		45.6
(1.8)
A 		49
(3)
A 		17
C 73.6
(3)
A 		23
(-3)
A 		35.5
(-1.5)
A 		50
(0.2)
A 		51
avr 54.1
(3) 		30
(-3) 		42.5
(0.1) 		47.9
(1.5) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 74
1 2 3 4 5 6 range
A 1
(-3)
A 		8.3
(-1.7)
A 		35.9
(3)
A 		1.5
(-2.9)
A 		7.9
(-1.8)
A 		31.4
(2.2)
A 		35
B 11
(-2.4)
A 		4.4
(-3)
A 		13.7
(-2.1)
A 		15.2
(-2)
A 		17.6
(-1.7)
A 		66.5
(3)
A 		62
C 1.9
(-3)
A 		7.9
(-2.5)
A 		8.1
(-2.5)
A 		13.4
(-2.1)
A 		10
(-2.3)
A 		74.6
(3)
A 		73
avr 4.6
(-3) 		6.9
(-2.7) 		19.2
(-1.3) 		10
(-2.4) 		11.8
(-2.2) 		57.5
(3) 		53
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171904_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28067
Sequence Type Exemplar sequence
Representative Public ID AU115803 NCBI
Target Description AU115803_rc /REP_DB=TREMBL Accession /GB=AU115803 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk736h9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) AU115803
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
AU115803 AU115803_rc /REP_DB=TREMBL Accession /GB=AU115803 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk736h9 : 3prime end, single read. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_073358 1/11 Cross Hyb Matching Probes A 
SNAP00000017224 1/11 Cross Hyb Matching Probes None
GENEFINDER00000017230 1/11 Cross Hyb Matching Probes None
D1054.11 1/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Sequence
Target Sequence 
>C. ELEGANS:171904_X_AT
tttccgaaaagcaccgcggtttctgtggtgtctcgtgctctttgaacggcccttaaaaca
ccaagggaggctattaatttgcactcaatcgtaccgatatccgcattaggtctccaaggt
gaacagcctctagtcgatagaataatgtaggtaagggaagtcggcaaacnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccggcggctggtgccgccg
cccccgctggtgctgtcaccaaagctgctgccggagttacagaagccgctgcc

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTCCGAAAAGCACCGCGGTTTCTG 15 437 15 Antisense
AAGCACCGCGGTTTCTGTGGTGTCT 680 151 23 Antisense
TGCTCTTTGAACGGCCCTTAAAACA 254 575 50 Antisense
GAGGCTATTAATTTGCACTCAATCG 532 401 81 Antisense
GCACTCAATCGTACCGATATCCGCA 649 315 95 Antisense
GATATCCGCATTAGGTCTCCAAGGT 520 423 110 Antisense
GGTCTCCAAGGTGAACAGCCTCTAG 474 503 123 Antisense
AGGTGAACAGCCTCTAGTCGATAGA 343 57 131 Antisense
CCCGCTGGTGCTGTCACCAAAGCTG 297 261 257 Antisense
TCACCAAAGCTGCTGCCGGAGTTAC 28 625 270 Antisense
TGCCGGAGTTACAGAAGCCGCTGCC 307 583 283 Antisense
Sequence Source Affymetrix Proprietary Database