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[171902_x_at] ATPase

Description AV199629_rc /REP_DB=TREMBL Accession /GB=AV199629 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk549c1 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 19      4grp_high_8_8 > 23      6grp_total > 18      4grp_total > 33      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 37
(-2.7)
A 		34.9
(-3)
P 		75
(3)
P 		70.2
(2.3)
P 		40
B 44.6
(-3)
P 		96.5
(3)
M 		62.9
(-0.9)
P 		93.2
(2.6)
P 		52
C 29.4
(-3)
M 		64.2
(3)
A 		57.8
(1.9)
P 		57.9
(1.9)
P 		35
avr 37
(-3) 		65.2
(1.6) 		65.2
(1.6) 		73.8
(3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 77
1 2 3 4 5 6 range
A 70.2
(3)
P 		9.1
(-3)
A 		18.5
(-2.1)
A 		26.7
(-1.3)
P 		35.2
(-0.4)
A 		45.2
(0.5)
A 		61
B 77.9
(3)
P 		35.7
(-1.1)
P 		22.7
(-2.4)
P 		32.1
(-1.5)
A 		30.9
(-1.6)
A 		16.2
(-3)
P 		62
C 86.2
(3)
P 		85.6
(2.9)
P 		15.8
(-3)
A 		52.5
(0.1)
A 		60.5
(0.8)
P 		43.7
(-0.6)
P 		70
avr 78.1
(3) 		43.5
(-0.5) 		19
(-3) 		37.1
(-1.2) 		42.2
(-0.6) 		35
(-1.4) 		59
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 13.5
(-0.1)
A 		7.6
(-3)
P 		19.6
(3)
P 		10.3
(-1.7)
P 		12
B 14.2
(-3)
P 		23.8
(3)
M 		14.6
(-2.8)
P 		19.9
(0.6)
P 		10
C 9.7
(-3)
M 		18.5
(2.1)
A 		20.1
(3)
P 		9.8
(-2.9)
P 		10
avr 12.5
(-3) 		16.6
(1.4) 		18.1
(3) 		13.3
(-2.1) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 12.9
(3)
P 		3.2
(-3)
A 		4
(-2.5)
A 		6.8
(-0.8)
P 		10.6
(1.6)
A 		11
(1.8)
A 		10
B 27.1
(3)
P 		11.9
(-1.2)
P 		5.5
(-3)
P 		8.5
(-2.2)
A 		12.6
(-1)
A 		6
(-2.9)
P 		22
C 32
(3)
P 		26.1
(1.7)
P 		4
(-3)
A 		10.6
(-1.6)
A 		19.6
(0.3)
P 		14.6
(-0.7)
P 		28
avr 24
(3) 		13.7
(-0.2) 		4.5
(-3) 		8.6
(-1.7) 		14.3
(0) 		10.5
(-1.2) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171902_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27902
Sequence Type Exemplar sequence
Representative Public ID AV199629 NCBI
Target Description AV199629_rc /REP_DB=TREMBL Accession /GB=AV199629 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk549c1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067760
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067760 NCBI Caenorhabditis elegans R05C11.3 (ATPase) mRNA, complete cds. A 
R05C11.3 ENSEMBL cdna:known chromosome:CEL140:IV:2084033:2091921:1 gene:R05C11.3 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:2091574-2091868(+) 90.1 90.1
Public Domain and Genome References
Gene Title ATPase
Ensembl R05C11.3
Entrez Gene 177004 Entrez gene
SwissProt Q9TYP9 EMBL-EBI
WormBase CE28747 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:18296_AT calcium-transporting ATPase 4, plasma membrane-type / Ca2+-ATPase, isoform 4 (ACA4) at
ATH1-121501:245117_AT calcium-transporting ATPase 4, plasma membrane-type / Ca2+-ATPase, isoform 4 (ACA4) at
CANINE:1594040_AT similar to plasma membrane calcium ATPase 2 isoform b cfa
CANINE:1592543_AT similar to plasma membrane calcium ATPase 2 isoform b cfa
CANINE_2:CFA.9608.1.A1_AT similar to plasma membrane calcium ATPase 2 isoform b cfa
CANINE_2:CFAAFFX.8587.1.S1_AT similar to plasma membrane calcium ATPase 2 isoform b cfa
CANINE_2:CFAAFFX.8587.1.S1_S_AT similar to plasma membrane calcium ATPase 2 isoform b cfa
CHICKEN:GGAAFFX.3001.1.S1_AT similar to plasma membrane calcium ATPase 2; ATPase isoform 2, Na+K+ transporting, beta polypeptide 2; ATPase isoform 2 Na+K+ transporting beta polypeptide 2 gga
CHICKEN:GGAAFFX.3004.1.S1_AT similar to plasma membrane calcium ATPase 2; ATPase isoform 2, Na+K+ transporting, beta polypeptide 2; ATPase isoform 2 Na+K+ transporting beta polypeptide 2 gga
HG-U95AV2:37053_AT ATPase, Ca++ transporting, plasma membrane 2 hs
HG-U95AV2:41090_S_AT ATPase, Ca++ transporting, plasma membrane 2 hs
HG-U133_PLUS_2:211586_S_AT ATPase, Ca++ transporting, plasma membrane 2 hs
HG-U133A:211586_S_AT ATPase, Ca++ transporting, plasma membrane 2 hs
HG-U133A_2:211586_S_AT ATPase, Ca++ transporting, plasma membrane 2 hs
HU35KSUBA:L20977_AT ATPase, Ca++ transporting, plasma membrane 2 hs
HUGENEFL:X63575_S_AT ATPase, Ca++ transporting, plasma membrane 2 hs
HG-FOCUS:204685_S_AT ATPase, Ca++ transporting, plasma membrane 2 hs
HG-U133A:204685_S_AT ATPase, Ca++ transporting, plasma membrane 2 hs
HG-U133A_2:204685_S_AT ATPase, Ca++ transporting, plasma membrane 2 hs
HG-U133_PLUS_2:204685_S_AT ATPase, Ca++ transporting, plasma membrane 2 hs
U133_X3P:G190098_3P_S_AT ATPase, Ca++ transporting, plasma membrane 2 hs
U133_X3P:HS.89512.3.S1_3P_AT ATPase, Ca++ transporting, plasma membrane 2 hs
U133_X3P:HS.89512.0.S2_3P_A_AT ATPase, Ca++ transporting, plasma membrane 2 hs
U133_X3P:HS.305923.3.S1_3P_S_AT ATPase, Ca++ transporting, plasma membrane 2 hs
HG-U133A_2:216120_S_AT ATPase, Ca++ transporting, plasma membrane 2 hs
HG-U133_PLUS_2:216120_S_AT ATPase, Ca++ transporting, plasma membrane 2 hs
HG-U133A:216120_S_AT ATPase, Ca++ transporting, plasma membrane 2 hs
HG-U133_PLUS_2:234714_X_AT ATPase, Ca++ transporting, plasma membrane 2 hs
HG-U133B:234714_X_AT ATPase, Ca++ transporting, plasma membrane 2 hs
HG-U95C:59397_AT ATPase, Ca++ transporting, plasma membrane 2 hs
HG-U133_PLUS_2:234741_AT ATPase, Ca++ transporting, plasma membrane 2 hs
HG-U133B:234741_AT ATPase, Ca++ transporting, plasma membrane 2 hs
HG-U95B:59803_AT ATPase, Ca++ transporting, plasma membrane 2 hs
HU35KSUBC:RC_H62161_AT ATPase, Ca++ transporting, plasma membrane 2 hs
MOE430A:1420402_AT ATPase, Ca++ transporting, plasma membrane 2 mm
MOUSE430_2:1420402_AT ATPase, Ca++ transporting, plasma membrane 2 mm
MOUSE430A_2:1420402_AT ATPase, Ca++ transporting, plasma membrane 2 mm
MOUSE430_2:1420403_AT ATPase, Ca++ transporting, plasma membrane 2 mm
MOE430A:1420403_AT ATPase, Ca++ transporting, plasma membrane 2 mm
MOUSE430A_2:1420403_AT ATPase, Ca++ transporting, plasma membrane 2 mm
MU11KSUBB:MSA.28504.0_AT ATPase, Ca++ transporting, plasma membrane 2 mm
MG-U74AV2:95324_AT ATPase, Ca++ transporting, plasma membrane 2 mm
MG-U74CV2:138539_AT ATPase, Ca++ transporting, plasma membrane 2 mm
MOE430A:1433888_AT ATPase, Ca++ transporting, plasma membrane 2 mm
MOUSE430A_2:1433888_AT ATPase, Ca++ transporting, plasma membrane 2 mm
MOUSE430_2:1433888_AT ATPase, Ca++ transporting, plasma membrane 2 mm
RN-U34:L05557CDS_G_AT ATPase, Ca++ transporting, plasma membrane 2 rn
RG-U34A:L05557CDS_G_AT ATPase, Ca++ transporting, plasma membrane 2 rn
RN-U34:J03754COMPLETE_SEQ_AT ATPase, Ca++ transporting, plasma membrane 2 rn
RG-U34A:J03754COMPLETE_SEQ_AT ATPase, Ca++ transporting, plasma membrane 2 rn
RG-U34A:L05557CDS_AT ATPase, Ca++ transporting, plasma membrane 2 rn
RAE230A:1368698_AT ATPase, Ca++ transporting, plasma membrane 2 rn
RAT230_2:1368698_AT ATPase, Ca++ transporting, plasma membrane 2 rn
RAE230A:1387285_AT ATPase, Ca++ transporting, plasma membrane 2 rn
RAT230_2:1387285_AT ATPase, Ca++ transporting, plasma membrane 2 rn
RG-U34A:RC_AA943784_S_AT ATPase, Ca++ transporting, plasma membrane 2 rn
RN-U34:RC_AA943784_S_AT ATPase, Ca++ transporting, plasma membrane 2 rn
RN-U34:RC_AA955388_S_AT ATPase, Ca++ transporting, plasma membrane 2 rn
RG-U34A:RC_AA955388_S_AT ATPase, Ca++ transporting, plasma membrane 2 rn
YEAST_2:1770017_AT Vacuolar Ca2+ ATPase involved in depleting cytosol of Ca2+ ions; prevents growth inhibition by activation of calcineurin in the presence of elevated concentrations of calcium Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6812 cation transport inferred from electronic annotation QuickGO AmiGO
6816 calcium ion transport inferred from electronic annotation QuickGO AmiGO
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
5388 calcium-transporting ATPase activity inferred from electronic annotation QuickGO AmiGO
5509 calcium ion binding inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
15085 calcium ion transporter activity inferred from electronic annotation QuickGO AmiGO
15662 ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism inferred from electronic annotation QuickGO AmiGO
16820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_500161 R05C11.3 [Caenorhabditis elegans] gb|AAD12806.2| Hypothetical protein R05C11.3 [Caenorhabditis elegans] 0.0
blast CAA09308 calcium ATPase [Caenorhabditis elegans] 0.0
blast CAE74692 Hypothetical protein CBG22506 [Caenorhabditis briggsae] 0.0
Protein Families
Method ID Description E-Value
ec A1A4_HUMAN (Q13733) Sodium/potassium-transporting ATPase alpha-4 chain (EC 3.6.3.9) (Sodium pump 4) (Na+/K+ ATPase 4) 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR006068 EMBL-EBI Cation transporting ATPase, C-terminal 3.8E-21
Pfam IPR008250 EMBL-EBI E1-E2 ATPase-associated region 2.9E-25
Pfam IPR008250 EMBL-EBI E1-E2 ATPase-associated region 4.3E-21
Pfam IPR005834 EMBL-EBI Haloacid dehalogenase-like hydrolase 4.9E-16
Pfam IPR004014 EMBL-EBI Cation transporting ATPase, N-terminal 1.1E-19
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500161.1 10 89-107,122-144,326-348,368-390,816-838,848-867,888-910,930-952,964-986,1001-1023
R05C11.3 10 89-107,122-144,326-348,368-390,816-838,848-867,888-910,930-952,964-986,1001-1023
Sequence
Target Sequence 
>C. ELEGANS:171902_X_AT
gtgcctaatgtacatttgaccttaaaacgntagnatcaaantttcaatgatttgactttg
nnnnnnnnntaattctatttggtatttgccttaaacaggtgcacatatttccttgaaca

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGCCTAATGTACATTTGACCTTAA 298 477 90 Antisense
CTAATGTACATTTGACCTTAAAACG 124 227 94 Antisense
TAATTCTATTTGGTATTTGCCTTAA 26 635 159 Antisense
TTCTATTTGGTATTTGCCTTAAACA 443 683 162 Antisense
TATTTGGTATTTGCCTTAAACAGGT 449 627 165 Antisense
GGTATTTGCCTTAAACAGGTGCACA 156 505 170 Antisense
ATTTGCCTTAAACAGGTGCACATAT 506 15 173 Antisense
GCCTTAAACAGGTGCACATATTTCC 236 281 177 Antisense
TAAACAGGTGCACATATTTCCTTGA 578 639 181 Antisense
AACAGGTGCACATATTTCCTTGAAC 588 131 183 Antisense
ACAGGTGCACATATTTCCTTGAACA 479 107 184 Antisense
Sequence Source Affymetrix Proprietary Database