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[171898_x_at]

Description CEC5743_rc /REP_DB=TREMBL Accession /GB=C10574 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk149c8 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 35      4grp_highest_8_8 > 63      4grp_high_8_8 > 28      6grp_total > 35      4grp_total > 28      6grp_high1_sub > 02      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 151
1 2 3 4 range
A 318.4
(3)
P 		249.5
(-1.1)
P 		217.1
(-3)
P 		289.3
(1.3)
P 		101
B 247
(-1.9)
P 		368.3
(3)
P 		220.1
(-3)
P 		317.9
(1)
P 		148
C 272.6
(-3)
P 		293.5
(1.2)
P 		301.1
(2.7)
P 		302.7
(3)
P 		30
avr 279.3
(0.5) 		303.8
(3) 		246.1
(-3) 		303.3
(2.9) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 160
1 2 3 4 5 6 range
A 302.9
(3)
P 		289.4
(2.2)
P 		257
(0.3)
A 		248.4
(-0.2)
P 		202.2
(-3)
P 		244.2
(-0.5)
P 		101
B 241.2
(0.4)
P 		310.7
(3)
P 		212.8
(-0.7)
P 		150.8
(-3)
P 		209.5
(-0.8)
P 		224.3
(-0.2)
P 		160
C 257.8
(1.2)
P 		303.3
(3)
P 		243.1
(0.6)
P 		153.6
(-3)
P 		239
(0.4)
P 		240.2
(0.5)
P 		150
avr 267.3
(1.3) 		301.1
(3) 		237.6
(-0.3) 		184.3
(-3) 		216.9
(-1.3) 		236.2
(-0.3) 		117
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 115.9
(3)
P 		54.2
(-2)
P 		56.7
(-1.8)
P 		42.3
(-3)
P 		74
B 78.8
(1.2)
P 		91
(3)
P 		51
(-3)
P 		67.8
(-0.5)
P 		40
C 90.2
(1.4)
P 		84.4
(0.7)
P 		105
(3)
P 		51
(-3)
P 		54
avr 95
(3) 		76.5
(0.3) 		70.9
(-0.5) 		53.7
(-3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 73
1 2 3 4 5 6 range
A 55.8
(-3)
P 		102.9
(3)
P 		56
(-3)
A 		63
(-2.1)
P 		61
(-2.3)
P 		59.5
(-2.5)
P 		47
B 83.9
(1.2)
P 		103.4
(3)
P 		51.7
(-1.9)
P 		40
(-3)
P 		85.1
(1.3)
P 		83.6
(1.1)
P 		63
C 95.6
(3)
P 		92.5
(2.7)
P 		61.9
(-0.1)
P 		30.9
(-3)
P 		77.3
(1.3)
P 		80.4
(1.6)
P 		65
avr 78.4
(0.7) 		99.6
(3) 		56.5
(-1.7) 		44.6
(-3) 		74.5
(0.3) 		74.5
(0.3) 		55
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171898_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27888
Sequence Type Exemplar sequence
Representative Public ID CEC5743 NCBI
Target Description CEC5743_rc /REP_DB=TREMBL Accession /GB=C10574 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk149c8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F57G12.1.1 ENSEMBL cdna:known chromosome:CEL140:X:12169020:12171602:-1 gene:F57G12.1 None
F57G12.1.2 ENSEMBL cdna:known chromosome:CEL140:X:12169020:12171604:-1 gene:F57G12.1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12169141-12169368(-) 69.61 69.61
Public Domain and Genome References
Ensembl F57G12.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91534 Hypothetical protein F57G12.1 [Caenorhabditis elegans] ref|NP_510035.1| F57G12.1 [Caenorhabditis elegans] 1.0E-134
blast CAE69877 Hypothetical protein CBG16216 [Caenorhabditis briggsae] 1.0E-67
Sequence
Target Sequence 
>C. ELEGANS:171898_X_AT
tgcttctcgtcgggtggaaacacaattcttgctgacgctgtgaaaatcttcaccctgttg
aaacctcccgaaccgcttcccttccaaacgtctgtaataataggataattgttgttgatt
gatccattcaagcactttgtgagtgtatgttgtttctaccttttccnaaaagatctgctc
gnnnnnnngataggtgtcaataagcgtcatgttttcgatggtactg

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCTTCTCGTCGGGTGGAAACACAA 471 579 28 Antisense
CGTCGGGTGGAAACACAATTCTTGC 107 223 35 Antisense
GAAACACAATTCTTGCTGACGCTGT 198 355 44 Antisense
TCTTGCTGACGCTGTGAAAATCTTC 465 617 54 Antisense
GAAAATCTTCACCCTGTTGAAACCT 579 353 69 Antisense
TTCCCTTCCAAACGTCTGTAATAAT 218 697 104 Antisense
GATAATTGTTGTTGATTGATCCATT 18 423 131 Antisense
TGATCCATTCAAGCACTTTGTGAGT 377 565 147 Antisense
GAGTGTATGTTGTTTCTACCTTTTC 388 401 168 Antisense
GATAGGTGTCAATAAGCGTCATGTT 159 425 216 Antisense
AAGCGTCATGTTTTCGATGGTACTG 257 149 229 Antisense
Sequence Source Affymetrix Proprietary Database