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[171895_s_at]

Description C30399_rc /REP_DB=TREMBL Accession /GB=C30399 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk247a11 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 53      6grp_high1_10_10 > 34      4grp_highest_8_8 > 30      4grp_high_8_8 > 05      6grp_highest_nonorm > 37      6grp_total > 0      4grp_total > 03      6grp_highest_sub > 02      6grp_total_sub > Hat      6grp_high1_sub > 02      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17189
1 2 3 4 range
A 3692.3
(-2.6)
P 		2665.4
(-3)
P 		3990.1
(-2.5)
P 		19419.8
(3)
P 		16754
B 6287.1
(-0.1)
P 		2682.6
(-3)
P 		3145.6
(-2.6)
P 		10252.4
(3)
P 		7570
C 3949.4
(-2.3)
P 		2409.6
(-2.9)
P 		2230.4
(-3)
P 		17439.7
(3)
P 		15209
avr 4642.9
(-2.1) 		2585.9
(-3) 		3122
(-2.8) 		15704
(3) 		13118

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6492
1 2 3 4 5 6 range
A 4224.6
(-0.5)
P 		3459
(-1.7)
P 		6584.1
(3)
P 		2562.2
(-3)
P 		5446.5
(1.3)
P 		4052.7
(-0.8)
P 		4022
B 4138.9
(0.1)
P 		5256.6
(3)
P 		2963.5
(-3)
P 		3701.7
(-1.1)
P 		3928.4
(-0.5)
P 		4286.8
(0.5)
P 		2293
C 2645.3
(-2.8)
P 		8938.3
(3)
P 		2446.2
(-3)
P 		2929.3
(-2.6)
P 		2786.5
(-2.7)
P 		4033.1
(-1.5)
P 		6492
avr 3669.6
(-1.7) 		5884.6
(3) 		3997.9
(-1) 		3064.4
(-3) 		4053.8
(-0.9) 		4124.2
(-0.7) 		2820
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2362
1 2 3 4 range
A 1344.4
(-1)
P 		578.6
(-3)
P 		1043.1
(-1.8)
P 		2842.7
(3)
P 		2264
B 2004.9
(2.3)
P 		662.6
(-3)
P 		728.9
(-2.7)
P 		2184.8
(3)
P 		1522
C 1307.4
(-1.4)
P 		692.8
(-3)
P 		777.4
(-2.8)
P 		2940.6
(3)
P 		2248
avr 1552.2
(-0.3) 		644.7
(-3) 		849.8
(-2.4) 		2656
(3) 		2011

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2138
1 2 3 4 5 6 range
A 778.8
(-2.2)
P 		1230.2
(0.5)
P 		1433.9
(1.7)
P 		649.8
(-3)
P 		1643.5
(3)
P 		986.7
(-1)
P 		994
B 1440.1
(1.2)
P 		1749.7
(3)
P 		719.6
(-3)
P 		980.5
(-1.5)
P 		1596.1
(2.1)
P 		1598.5
(2.1)
P 		1030
C 980.5
(-1.9)
P 		2727.4
(3)
P 		622.6
(-2.9)
P 		589.1
(-3)
P 		901.7
(-2.1)
P 		1350.1
(-0.9)
P 		2138
avr 1066.5
(-1.3) 		1902.4
(3) 		925.4
(-2) 		739.8
(-3) 		1380.4
(0.3) 		1311.8
(-0) 		1163
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171895_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27997
Sequence Type Exemplar sequence
Representative Public ID C30399 NCBI
Target Description C30399_rc /REP_DB=TREMBL Accession /GB=C30399 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk247a11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064170(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064170 NCBI Caenorhabditis elegans Y17G7B.17 (Y17G7B.17) mRNA, complete cds. 11/11 None
Y17G7B.17 ENSEMBL cdna:known chromosome:CEL140:II:12092337:12099892:-1 gene:Y17G7B.17 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12092386-12092538(-) 50.67 50.67
Public Domain and Genome References
Gene Title
Ensembl Y17G7B.17
Entrez Gene 174849 Entrez gene
SwissProt Q9XXH7 EMBL-EBI
WormBase CE35650 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA19464 Hypothetical protein Y17G7B.17 [Caenorhabditis elegans] ref|NP_496571.2| Y17G7B.17 [Caenorhabditis elegans] 1.0E-104
blast CAE73542 Hypothetical protein CBG21010 [Caenorhabditis briggsae] 1.0E-56
blast EAL26529 GA20964-PA [Drosophila pseudoobscura] 1.0E-15
Sequence
Target Sequence 
>C. ELEGANS:171895_S_AT
attttctgtacatttcccaggtctcaccacgataaattttagggtcatgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTTCTGTACATTTCCCAGGTCTC 126 15 233 Antisense
TTTTCTGTACATTTCCCAGGTCTCA 704 675 234 Antisense
TTTCCCAGGTCTCACCACGATAAAT 106 669 245 Antisense
TTCCCAGGTCTCACCACGATAAATT 139 681 246 Antisense
TCCCAGGTCTCACCACGATAAATTT 610 597 247 Antisense
CCCAGGTCTCACCACGATAAATTTT 167 259 248 Antisense
CCAGGTCTCACCACGATAAATTTTA 322 663 249 Antisense
CAGGTCTCACCACGATAAATTTTAG 72 209 250 Antisense
GGTCTCACCACGATAAATTTTAGGG 472 503 252 Antisense
CTCACCACGATAAATTTTAGGGTCA 471 1 255 Antisense
ACCACGATAAATTTTAGGGTCATGT 411 83 258 Antisense
Sequence Source Affymetrix Proprietary Database