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[171891_at]

Description CEK019C2R_rc /REP_DB=TREMBL Accession /GB=D32594 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk19c2 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 32      4grp_high_8_8 > 23      6grp_total > 42      4grp_total > 24      6grp_high1_sub > 02_03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 365
1 2 3 4 range
A 207.7
(-3)
P 		206.4
(-3)
P 		243.2
(-1.8)
P 		393.1
(3)
P 		187
B 27.7
(-3)
P 		211.5
(0.7)
A 		327.5
(3)
A 		235.1
(1.2)
P 		300
C 242.1
(3)
M 		147.8
(-3)
P 		187
(-0.5)
P 		240.6
(2.9)
M 		94
avr 159.2
(-3) 		188.6
(-1.6) 		252.6
(1.3) 		289.6
(3) 		130

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 266
1 2 3 4 5 6 range
A 289
(1.8)
P 		118.8
(-3)
A 		246.9
(0.6)
A 		205.3
(-0.6)
P 		332.9
(3)
P 		194.4
(-0.9)
P 		214
B 246.8
(-0.8)
P 		345.1
(2.1)
P 		375
(3)
P 		264.8
(-0.2)
M 		199.3
(-2.1)
P 		170.2
(-3)
P 		205
C 185.2
(-0.3)
P 		151.8
(-1.5)
P 		191.9
(-0)
P 		276.8
(3)
P 		196.4
(0.1)
P 		108.8
(-3)
P 		168
avr 240.3
(1.4) 		205.2
(-0.5) 		271.3
(3) 		249
(1.8) 		242.9
(1.5) 		157.8
(-3) 		114
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 75.6
(3)
P 		44.8
(-3)
P 		63.6
(0.7)
P 		57.5
(-0.5)
P 		31
B 8.8
(-3)
P 		52.2
(0.9)
A 		75.9
(3)
A 		50.1
(0.7)
P 		67
C 80.1
(3)
M 		42.5
(-2.7)
P 		65.2
(0.7)
P 		40.6
(-3)
M 		40
avr 54.8
(-0.7) 		46.5
(-3) 		68.2
(3) 		49.4
(-2.2) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 79
1 2 3 4 5 6 range
A 53.3
(-1.9)
P 		42.3
(-3)
A 		53.8
(-1.8)
A 		52.1
(-2)
P 		100.5
(3)
P 		47.3
(-2.5)
P 		58
B 85.9
(-0.4)
P 		114.9
(3)
P 		91.1
(0.2)
P 		70.1
(-2.2)
M 		81
(-1)
P 		63.5
(-3)
P 		51
C 68.6
(3)
P 		46.3
(-1.2)
P 		48.8
(-0.7)
P 		55.7
(0.6)
P 		63.6
(2.1)
P 		36.4
(-3)
P 		32
avr 69.3
(0.7) 		67.8
(0.4) 		64.6
(-0.1) 		59.3
(-1.1) 		81.7
(3) 		49.1
(-3) 		33
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 171891_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27789
Sequence Type Exemplar sequence
Representative Public ID CEK019C2R NCBI
Target Description CEK019C2R_rc /REP_DB=TREMBL Accession /GB=D32594 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk19c2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) CEK019C2R
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
CEK019C2R CEK019C2R_rc /REP_DB=TREMBL Accession /GB=D32594 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk19c2 : 3prime end, single read. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrM:12847-13211(+) 49.16 83.86
Sequence
Target Sequence 
>C. ELEGANS:171891_AT
gatgaataaatgttaatcttcttaacatcccaagacttttcttatacgtagattttnntg
gtcctctannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnt
ttaaggagttaatatacaagtttntagttgattatttggctgcanntagtatttatacaa
naaagaatttangattnatagatttacccttaagtaatattaattactaaggggtacacc
ttattagcaagcagtggtatatttataacttactatccta

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGAATAAATGTTAATCTTCTTAA 616 407 102 Antisense
TAATCTTCTTAACATCCCAAGACTT 361 633 115 Antisense
TCTTCTTAACATCCCAAGACTTTTC 2 615 118 Antisense
CTTAACATCCCAAGACTTTTCTTAT 223 221 122 Antisense
ACATCCCAAGACTTTTCTTATACGT 131 101 126 Antisense
CAAGACTTTTCTTATACGTAGATTT 587 179 132 Antisense
AGGGGTACACCTTATTAGCAAGCAG 380 55 331 Antisense
GGTACACCTTATTAGCAAGCAGTGG 221 503 334 Antisense
CACCTTATTAGCAAGCAGTGGTATA 211 201 338 Antisense
ATTAGCAAGCAGTGGTATATTTATA 168 7 344 Antisense
GGTATATTTATAACTTACTATCCTA 256 503 357 Antisense
Sequence Source Affymetrix Proprietary Database