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[171890_x_at]

Description CEK076F7R_rc /REP_DB=TREMBL Accession /GB=D64617 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk76f7 : 3prime end, single read.
Cluster 6grp_total > 28      4grp_total > 07      6grp_cgc > 02      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 119
1 2 3 4 range
A 152.2
(1.9)
P 		55.3
(-3)
A 		148.1
(1.7)
P 		173.9
(3)
P 		119
B 125.9
(2.3)
M 		75.9
(-3)
A 		84.7
(-2.1)
A 		132.2
(3)
P 		56
C 122.2
(-0.4)
P 		88.2
(-3)
A 		167.5
(3)
P 		140.9
(1)
P 		79
avr 133.4
(1.8) 		73.1
(-3) 		133.4
(1.8) 		149
(3) 		76

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 147
1 2 3 4 5 6 range
A 119.4
(-1.2)
A 		104.7
(-3)
M 		153.5
(3)
P 		122.2
(-0.8)
A 		119.7
(-1.2)
A 		115.6
(-1.7)
P 		49
B 147.1
(3)
P 		116.4
(1.6)
P 		92
(0.4)
A 		19.4
(-3)
A 		116.8
(1.6)
P 		67.7
(-0.7)
P 		128
C 153.8
(3)
P 		78.3
(-0.1)
A 		6.9
(-3)
A 		73
(-0.3)
A 		65.2
(-0.6)
M 		67.3
(-0.5)
A 		147
avr 140.1
(3) 		99.8
(-0.5) 		84.1
(-1.9) 		71.5
(-3) 		100.6
(-0.5) 		83.5
(-2) 		69
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 55.4
(3)
P 		12
(-3)
A 		38.7
(0.7)
P 		25.5
(-1.1)
P 		43
B 40.1
(3)
M 		18.7
(-3)
A 		19.6
(-2.7)
A 		28.2
(-0.3)
P 		21
C 40.5
(-0.1)
P 		25.4
(-2.7)
A 		58.4
(3)
P 		23.8
(-3)
P 		35
avr 45.3
(3) 		18.7
(-3) 		38.9
(1.6) 		25.8
(-1.4) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 22
(-3)
A 		37.2
(3)
M 		33.4
(1.5)
P 		31
(0.6)
A 		36.1
(2.6)
A 		28.1
(-0.6)
P 		15
B 51.2
(3)
P 		38.8
(1.4)
P 		22.3
(-0.8)
A 		5.1
(-3)
A 		47.5
(2.5)
P 		25.3
(-0.4)
P 		46
C 57
(3)
P 		23.9
(-0.6)
A 		1.8
(-3)
A 		14.7
(-1.6)
A 		21.1
(-0.9)
M 		22.5
(-0.8)
A 		55
avr 43.4
(3) 		33.3
(0.7) 		19.2
(-2.5) 		16.9
(-3) 		34.9
(1.1) 		25.3
(-1.1) 		27
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171890_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27708
Sequence Type Exemplar sequence
Representative Public ID CEK076F7R NCBI
Target Description CEK076F7R_rc /REP_DB=TREMBL Accession /GB=D64617 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk76f7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171943, NM_171650
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F56E3.3a ENSEMBL cdna:known chromosome:CEL140:X:3171417:3178653:-1 gene:F56E3.3 None
F56E3.3b ENSEMBL cdna:known chromosome:CEL140:X:3171436:3178653:-1 gene:F56E3.3 A 
NM_171650 NCBI Caenorhabditis elegans Kinesin-Like Protein family member (klp-4) (klp-4) mRNA, complete cds. A 
NM_171943 NCBI Caenorhabditis elegans Kinesin-Like Protein family member (klp-4) (klp-4) mRNA, complete cds. A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_076145 1/11 Cross Hyb Matching Probes A 
GENEFINDER00000022814 1/11 Cross Hyb Matching Probes None
F56E3.3c 1/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3171430-3171871(-) 73.89 73.89
Public Domain and Genome References
Ensembl F56E3.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39239 Kinesin-like protein protein 4, isoform a [Caenorhabditis elegans] ref|NP_741745.1| Kinesin-Like Protein family member (klp-4) [Caenorhabditis elegans] 0.0
blast AAM51501 Kinesin-like protein protein 4, isoform b [Caenorhabditis elegans] ref|NP_741746.1| Kinesin-Like Protein family member (klp-4) [Caenorhabditis elegans] 0.0
blast AAN39668 Kinesin-like protein protein 4, isoform c [Caenorhabditis elegans] ref|NP_508546.2| Kinesin-Like Protein family member (klp-4) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000253 EMBL-EBI Forkhead-associated (FHA) 3.1E-6
Pfam IPR001752 EMBL-EBI Kinesin, motor region 6.4E-107
Pfam IPR001752 EMBL-EBI Kinesin, motor region 9.1E-45
Sequence
Target Sequence 
>C. ELEGANS:171890_X_AT
cctctgccttccactagataacaacaaccaatttgcgccccnnnnnntncacaatggaga
cctggtggatcnccacaatccaactaaatacgatgcctcaatagtacatgtcaacttata
ttttgctttaaaatcgggacaagaaactgactaagcctacatgataaacgcgattcattt
gactgcaat

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCTCTGCCTTCCACTAGATAACAAC 681 267 22 Antisense
GATAACAACAACCAATTTGCGCCCC 471 421 38 Antisense
ACAATCCAACTAAATACGATGCCTC 516 113 96 Antisense
ATACGATGCCTCAATAGTACATGTC 380 21 109 Antisense
GATGCCTCAATAGTACATGTCAACT 218 415 113 Antisense
GTACATGTCAACTTATATTTTGCTT 272 461 125 Antisense
TATTTTGCTTTAAAATCGGGACAAG 8 659 140 Antisense
GGGACAAGAAACTGACTAAGCCTAC 700 239 157 Antisense
GAAACTGACTAAGCCTACATGATAA 685 355 164 Antisense
CTAAGCCTACATGATAAACGCGATT 503 227 172 Antisense
TAAACGCGATTCATTTGACTGCAAT 204 641 186 Antisense
Sequence Source Affymetrix Proprietary Database