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[171889_x_at]

Description CEK014A4R_rc /REP_DB=TREMBL Accession /GB=D27564 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk14a4 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 68      6grp_total > 56      4grp_total > 62      6grp_high1_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 511
1 2 3 4 range
A 739
(3)
P 		550.1
(0.3)
P 		574.6
(0.7)
P 		313.2
(-3)
A 		426
B 823.8
(3)
P 		614.1
(0.2)
P 		585.4
(-0.1)
P 		368.6
(-3)
M 		455
C 736.6
(3)
P 		483.2
(-1)
P 		595.1
(0.7)
P 		359.8
(-3)
A 		377
avr 766.5
(3) 		549.1
(-0.1) 		585
(0.4) 		347.2
(-3) 		419

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 293
1 2 3 4 5 6 range
A 374.2
(-1.4)
P 		393.7
(-0.9)
P 		389.8
(-1)
P 		322.5
(-3)
P 		329.7
(-2.8)
P 		522.4
(3)
P 		200
B 378
(-0.8)
P 		505.5
(3)
P 		306.7
(-3)
P 		319.2
(-2.6)
P 		356.3
(-1.5)
P 		440.4
(1)
P 		199
C 308.8
(-2.5)
P 		416.8
(-0.3)
P 		373.9
(-1.2)
P 		284.9
(-3)
A 		339.4
(-1.9)
P 		577.6
(3)
P 		293
avr 353.7
(-1.7) 		438.7
(0.8) 		356.8
(-1.6) 		308.9
(-3) 		341.8
(-2) 		513.5
(3) 		205
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 223
1 2 3 4 range
A 269.1
(3)
P 		119.4
(-1)
P 		150.2
(-0.2)
P 		45.8
(-3)
A 		223
B 262.7
(3)
P 		151.7
(-0.6)
P 		135.6
(-1.1)
P 		78.6
(-3)
M 		184
C 243.8
(3)
P 		138.9
(-0.4)
P 		207.4
(1.8)
P 		60.7
(-3)
A 		183
avr 258.5
(3) 		136.7
(-0.7) 		164.4
(0.1) 		61.7
(-3) 		197

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 136
1 2 3 4 5 6 range
A 69
(-3)
P 		140
(3)
P 		84.9
(-1.7)
P 		81.8
(-1.9)
P 		99.5
(-0.4)
P 		127.2
(1.9)
P 		71
B 131.5
(0.6)
P 		168.3
(3)
P 		74.5
(-3)
P 		84.6
(-2.4)
P 		144.8
(1.5)
P 		164.2
(2.7)
P 		94
C 114.4
(-0.5)
P 		127.2
(0.1)
P 		95.2
(-1.3)
P 		57.3
(-3)
A 		109.8
(-0.7)
P 		193.4
(3)
P 		136
avr 105
(-0.9) 		145.2
(1.9) 		84.9
(-2.3) 		74.6
(-3) 		118
(-0) 		161.6
(3) 		87
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171889_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27982
Sequence Type Exemplar sequence
Representative Public ID CEK014A4R NCBI
Target Description CEK014A4R_rc /REP_DB=TREMBL Accession /GB=D27564 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk14a4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066098
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066098 NCBI Caenorhabditis elegans K04C2.2 (K04C2.2) mRNA, complete cds. A 
SNAP00000012110 ENSEMBL cdna:SNAP chromosome:CEL140:III:6889707:6894867:1 None
K04C2.2 ENSEMBL cdna:known chromosome:CEL140:III:6889706:6895021:1 gene:K04C2.2 None
GENEFINDER00000012114 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6892016:6894867:1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6894084-6894982(+) 91.76 91.76
Public Domain and Genome References
Gene Title
Ensembl K04C2.2
Entrez Gene 175960 Entrez gene
SwissProt Q21210 EMBL-EBI
WormBase CE00722 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA50675 Hypothetical protein K04C2.2 [Caenorhabditis elegans] ref|NP_498499.1| K04C2.2 [Caenorhabditis elegans] 0.0
blast CAE71321 Hypothetical protein CBG18218 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR007015 EMBL-EBI DNA polymerase V 3.6E-9
Pfam IPR007015 EMBL-EBI DNA polymerase V 3.6E-9
Pfam IPR007015 EMBL-EBI DNA polymerase V 3.6E-9
Sequence
Target Sequence 
>C. ELEGANS:171889_X_AT
ttggaaaattggccgctgcttaccttccagaaagttgttgattcttgataaatcggagct
ccaaaacaaacgctattcgggagcttgtccttcaaactcattctcaaggtcacaagtttg
cattccaccacggacgagaaacacgtggatgcactccgcgaatctctcgaatatgtcatt
cagaagatgtttgaaggtgaagttttcattcaactggngaagatcaacccgacctgccat
cacatcatcgggaagtctatcgctggtgcattcacctctatcgagaaga

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGGAAAATTGGCCGCTGCTTACCT 154 705 37 Antisense
ATCGGAGCTCCAAAACAAACGCTAT 123 33 88 Antisense
AAACGCTATTCGGGAGCTTGTCCTT 33 127 104 Antisense
GAGCTTGTCCTTCAAACTCATTCTC 358 387 117 Antisense
CAAGGTCACAAGTTTGCATTCCACC 90 183 141 Antisense
GCATTCCACCACGGACGAGAAACAC 320 307 156 Antisense
CGAGAAACACGTGGATGCACTCCGC 335 251 171 Antisense
CACTCCGCGAATCTCTCGAATATGT 22 199 188 Antisense
CTGCCATCACATCATCGGGAAGTCT 128 237 270 Antisense
GGAAGTCTATCGCTGGTGCATTCAC 552 531 287 Antisense
GGTGCATTCACCTCTATCGAGAAGA 408 501 301 Antisense
Sequence Source Affymetrix Proprietary Database