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[171887_x_at]

Description CEK064H7R_rc /REP_DB=TREMBL Accession /GB=D71285 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk64h7 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 90      6grp_high1_10_10 > 19      4grp_highest_8_8 > 02      4grp_high_8_8 > 45      6grp_highest_nonorm > 71      6grp_total > 29      4grp_total > 50      6grp_cgc > 99      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 86
1 2 3 4 range
A 507.9
(-0.1)
P 		541.1
(3)
P 		499
(-1)
P 		477.8
(-3)
P 		63
B 514
(0.9)
P 		532.2
(2.3)
P 		542
(3)
P 		460.9
(-3)
P 		81
C 459.4
(-3)
P 		492.7
(-0.7)
P 		503.4
(0.1)
P 		545.7
(3)
P 		86
avr 493.8
(-3) 		522
(3) 		514.8
(1.5) 		494.8
(-2.8) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 353
1 2 3 4 5 6 range
A 436.4
(0.3)
P 		400.2
(-0.3)
P 		273
(-2.4)
P 		303.4
(-1.9)
P 		592.5
(3)
P 		239.5
(-3)
P 		353
B 452.7
(3)
P 		441.8
(2.7)
P 		245.7
(-3)
P 		337.5
(-0.3)
P 		428.1
(2.3)
P 		349.7
(0)
P 		207
C 344.4
(0.2)
P 		348.2
(0.4)
P 		338.7
(0)
P 		252.1
(-3)
P 		424.1
(3)
P 		306.6
(-1.1)
P 		172
avr 411.2
(0.8) 		396.7
(0.4) 		285.8
(-3) 		297.7
(-2.6) 		481.6
(3) 		298.6
(-2.6) 		196
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 115
1 2 3 4 range
A 184.9
(3)
P 		117.5
(-0.5)
P 		130.5
(0.2)
P 		69.9
(-3)
P 		115
B 163.9
(3)
P 		131.4
(0)
P 		125.6
(-0.5)
P 		98.2
(-3)
P 		66
C 152.1
(1.3)
P 		141.7
(0.6)
P 		175.4
(3)
P 		92
(-3)
P 		83
avr 167
(3) 		130.2
(0.3) 		143.8
(1.3) 		86.7
(-3) 		80

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 128
1 2 3 4 5 6 range
A 80.5
(-1.9)
P 		142.3
(1.2)
P 		59.5
(-2.9)
P 		76.9
(-2.1)
P 		178.8
(3)
P 		58.3
(-3)
P 		121
B 157.5
(2.1)
P 		147.1
(1.6)
P 		59.7
(-3)
P 		89.4
(-1.4)
P 		173.9
(3)
P 		130.4
(0.7)
P 		114
C 127.7
(2.3)
P 		106.2
(0.8)
P 		86.2
(-0.5)
P 		50.7
(-3)
P 		137.2
(3)
P 		102.6
(0.6)
P 		87
avr 121.9
(0.4) 		131.9
(1) 		68.5
(-3) 		72.3
(-2.8) 		163.3
(3) 		97.1
(-1.2) 		95
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171887_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28036
Sequence Type Exemplar sequence
Representative Public ID CEK064H7R NCBI
Target Description CEK064H7R_rc /REP_DB=TREMBL Accession /GB=D71285 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk64h7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) CEK064H7R
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
CEK064H7R CEK064H7R_rc /REP_DB=TREMBL Accession /GB=D71285 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk64h7 : 3prime end, single read. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_067291 6/11 Cross Hyb Matching Probes None
Y39E4A.2b 6/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12952492-12952732(-) 78.31 78.31
Sequence
Target Sequence 
>C. ELEGANS:171887_X_AT
taaacgtttccaccacagggaactgcttgaatccagtnnnnnatcggtcttctaatctat
tacgaaacgggccaacctccacnnnnnnnnnnnnnnnnnnnnnnnannnnnnncaccacg
tttacttttctcgacttttcctgtcagnnnnnngacctactcacacgggttgtattcatt
tggcacatccagagatgcctactaatgttcata

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAAACGTTTCCACCACAGGGAACTG 613 635 54 Antisense
GTTTCCACCACAGGGAACTGCTTGA 303 451 59 Antisense
ACCACAGGGAACTGCTTGAATCCAG 390 39 65 Antisense
ATCGGTCTTCTAATCTATTACGAAA 75 35 96 Antisense
TCTAATCTATTACGAAACGGGCCAA 430 223 104 Antisense
GACCTACTCACACGGGTTGTATTCA 697 381 207 Antisense
CACACGGGTTGTATTCATTTGGCAC 413 195 215 Antisense
GGGTTGTATTCATTTGGCACATCCA 14 497 220 Antisense
TTGGCACATCCAGAGATGCCTACTA 294 709 233 Antisense
ATCCAGAGATGCCTACTAATGTTCA 202 41 240 Antisense
CCAGAGATGCCTACTAATGTTCATA 55 271 242 Antisense
Sequence Source Affymetrix Proprietary Database