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[171886_x_at]

Description CEC4603_rc /REP_DB=TREMBL Accession /GB=C10460 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk146d10 : 3prime end, single read.
Cluster 6grp_total > 93      4grp_total > 25      6grp_cgc > 99      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 173
1 2 3 4 range
A 120.8
(-3)
A 		187.2
(-0.4)
A 		214.9
(0.7)
A 		271.5
(3)
A 		151
B 133.3
(-3)
A 		212.4
(3)
A 		156.6
(-1.2)
A 		207.1
(2.6)
P 		79
C 163.7
(-2.8)
A 		230.1
(0.2)
A 		158.9
(-3)
A 		294.2
(3)
A 		135
avr 139.3
(-3) 		209.9
(0.6) 		176.8
(-1.1) 		257.6
(3) 		118

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 132
1 2 3 4 5 6 range
A 90.7
(-3)
A 		116.6
(-1.8)
A 		110.8
(-2)
A 		117.2
(-1.7)
A 		215.3
(3)
A 		162.4
(0.5)
A 		125
B 129.8
(-3)
A 		136.3
(-2.4)
A 		159.3
(-0.5)
A 		184.8
(1.7)
A 		199.8
(3)
A 		181.1
(1.4)
M 		70
C 156.5
(0.6)
A 		117.9
(-1.3)
A 		195
(2.5)
A 		83.5
(-3)
A 		205.2
(3)
A 		89.4
(-2.7)
A 		122
avr 125.7
(-2.8) 		123.6
(-3) 		155
(-0.7) 		128.5
(-2.6) 		206.8
(3) 		144.3
(-1.5) 		83
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 44
(-1.4)
A 		40.6
(-2.7)
A 		56.2
(3)
A 		39.7
(-3)
A 		17
B 42.5
(-0.7)
A 		52.4
(3)
A 		36.3
(-3)
A 		44.1
(-0.1)
P 		16
C 54.2
(-1.3)
A 		66.2
(3)
A 		55.4
(-0.9)
A 		49.6
(-3)
A 		17
avr 46.9
(-1.3) 		53.1
(3) 		49.3
(0.3) 		44.5
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 16.7
(-3)
A 		41.5
(0.1)
A 		24.1
(-2.1)
A 		29.7
(-1.4)
A 		65
(3)
A 		39.5
(-0.2)
A 		48
B 45.2
(-2.1)
A 		45.4
(-2.1)
A 		38.7
(-3)
A 		49
(-1.5)
A 		81.2
(3)
A 		67.5
(1.1)
M 		43
C 58
(2)
A 		36
(-0.7)
A 		49.6
(1)
A 		16.8
(-3)
A 		66.4
(3)
A 		29.9
(-1.4)
A 		50
avr 40
(-1.7) 		41
(-1.6) 		37.5
(-2.1) 		31.8
(-3) 		70.9
(3) 		45.6
(-0.9) 		39
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171886_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28064
Sequence Type Exemplar sequence
Representative Public ID CEC4603 NCBI
Target Description CEC4603_rc /REP_DB=TREMBL Accession /GB=C10460 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk146d10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) CEC4603
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
CEC4603 CEC4603_rc /REP_DB=TREMBL Accession /GB=C10460 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk146d10 : 3prime end, single read. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Sequence
Target Sequence 
>C. ELEGANS:171886_X_AT
ctggattttcaagaaatcttggggagnnnnnnnnnnnnnnnnnnnnnnnatccgtatcgc
ccgtaannnnnacaatcnctncggantnnnnnnnnaggccagttatccantggtctaaan
ttggacnnnnnnnnnnnnnnnnnnnnttggaacatttanttgtagccccgaattccaatt
ctttgactctttt

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTGGATTTTCAAGAAATCTTGGGGA 97 241 97 Antisense
TGGATTTTCAAGAAATCTTGGGGAG 362 543 98 Antisense
TTGTAGCCCCGAATTCCAATTCTTT 87 701 256 Antisense
GTAGCCCCGAATTCCAATTCTTTGA 599 457 258 Antisense
TAGCCCCGAATTCCAATTCTTTGAC 155 651 259 Antisense
AGCCCCGAATTCCAATTCTTTGACT 695 79 260 Antisense
GCCCCGAATTCCAATTCTTTGACTC 123 287 261 Antisense
CCCCGAATTCCAATTCTTTGACTCT 498 261 262 Antisense
CCCGAATTCCAATTCTTTGACTCTT 486 259 263 Antisense
CCGAATTCCAATTCTTTGACTCTTT 445 263 264 Antisense
CGAATTCCAATTCTTTGACTCTTTT 141 255 265 Antisense
Sequence Source Affymetrix Proprietary Database