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[171885_x_at]

Description CEK012E2R_rc /REP_DB=TREMBL Accession /GB=D27529 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk12e2 : 3prime end, single read.
Cluster 6grp_total > 95      4grp_total > 34      6grp_cgc > 78      6grp_cgc_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 26.8
(-3)
A 		76.9
(3)
A 		64.3
(1.5)
P 		71.4
(2.3)
A 		50
B 30.2
(0.3)
A 		40.6
(3)
A 		17.9
(-3)
A 		23.9
(-1.4)
A 		23
C 18.2
(-2)
A 		51.8
(3)
A 		11.1
(-3)
A 		48.7
(2.5)
A 		41
avr 25.1
(-3) 		56.4
(3) 		31.1
(-1.8) 		48
(1.4) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 101
1 2 3 4 5 6 range
A 9
(-3)
A 		36.4
(-1.1)
A 		23
(-2)
A 		26.9
(-1.8)
A 		85.5
(2.3)
A 		95.3
(3)
A 		86
B 25.2
(-3)
A 		25.8
(-2.9)
A 		47.9
(0.3)
A 		66.1
(3)
A 		41.9
(-0.6)
P 		54.8
(1.3)
A 		41
C 12.2
(-3)
A 		35.8
(-1.5)
A 		44.6
(-1)
A 		50
(-0.7)
A 		109.8
(3)
P 		92.7
(1.9)
P 		98
avr 15.5
(-3) 		32.7
(-1.4) 		38.5
(-0.9) 		47.7
(-0) 		79.1
(2.8) 		80.9
(3) 		65
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 9.7
(-3)
A 		16.7
(2.9)
A 		16.8
(3)
P 		10.5
(-2.3)
A 		7
B 9.6
(2.6)
A 		10
(3)
A 		4.1
(-3)
A 		5.1
(-2)
A 		6
C 6
(-1.9)
A 		14.9
(3)
A 		3.9
(-3)
A 		8.2
(-0.7)
A 		11
avr 8.4
(-2.5) 		13.9
(3) 		8.3
(-2.6) 		7.9
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 1.7
(-3)
A 		13
(-0.2)
A 		5
(-2.2)
A 		6.8
(-1.7)
A 		25.8
(3)
A 		23.2
(2.4)
A 		24
B 8.8
(-2.9)
A 		8.6
(-3)
A 		11.6
(-1.5)
A 		17.5
(1.5)
A 		17
(1.3)
P 		20.4
(3)
A 		12
C 4.5
(-3)
A 		10.9
(-1.8)
A 		11.3
(-1.7)
A 		10
(-1.9)
A 		35.5
(3)
P 		31
(2.1)
P 		31
avr 5
(-3) 		10.8
(-1.4) 		9.3
(-1.8) 		11.4
(-1.2) 		26.1
(3) 		24.9
(2.7) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171885_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27948
Sequence Type Exemplar sequence
Representative Public ID CEK012E2R NCBI
Target Description CEK012E2R_rc /REP_DB=TREMBL Accession /GB=D27529 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk12e2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062839
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000017628 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6198742:6201358:1 None
SNAP00000017617 ENSEMBL cdna:SNAP chromosome:CEL140:II:6198742:6201358:1 None
C30B5.1 ENSEMBL cdna:known chromosome:CEL140:II:6198681:6201562:1 gene:C30B5.1 A 
NM_062839 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-319) (tag-319) mRNA, complete cds. A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6201235-6201514(+) 61.17 61.17
Public Domain and Genome References
Gene Title
Gene Symbol tag-319
Ensembl C30B5.1
Entrez Gene 174029 Entrez gene
SwissProt Q18320 EMBL-EBI
WormBase CE37325 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK31466 Hypothetical protein C30B5.1 [Caenorhabditis elegans] ref|NP_495240.2| Temporarily Assigned Gene name family member (tag-319) [Caenorhabditis elegans] 0.0
blast T15708 hypothetical protein C30B5.1 - Caenorhabditis elegans 0.0
blast CAE59263 Hypothetical protein CBG02591 [Caenorhabditis briggsae] 1.0E-161
Sequence
Target Sequence 
>C. ELEGANS:171885_X_AT
tggaccggaaacggggcgagtctcggttcttgcctccttgccccatccaaaacttctgtt
tccaacactggcgagttcggaaaagatcaacacaagaagtannnnnnnnnnnnnnnnnnn
nnnnctngatggaccaatcaanaactttcagtgacggaacagccgaaagaataatgtttg
ttttctcatccaatctattggcattgttttattcccacatttatcgttttattgcacttg
ttttaaccaattatactgtatgtcatgttattatttgtactgcactttcctagttttcca
tgttgtc

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGACCGGAAACGGGGCGAGTCTCG 619 519 53 Antisense
GAAACGGGGCGAGTCTCGGTTCTTG 626 355 60 Antisense
CCATCCAAAACTTCTGTTTCCAACA 481 269 95 Antisense
CTGTTTCCAACACTGGCGAGTTCGG 278 237 108 Antisense
GGCGAGTTCGGAAAAGATCAACACA 376 541 122 Antisense
AACTTTCAGTGACGGAACAGCCGAA 455 139 195 Antisense
ATGTTTGTTTTCTCATCCAATCTAT 18 49 226 Antisense
ATTGGCATTGTTTTATTCCCACATT 642 3 249 Antisense
TTCCCACATTTATCGTTTTATTGCA 448 695 264 Antisense
GTTATTATTTGTACTGCACTTTCCT 677 447 319 Antisense
CACTTTCCTAGTTTTCCATGTTGTC 467 195 335 Antisense
Sequence Source Affymetrix Proprietary Database