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[171884_x_at]

Description CEK067G4R_rc /REP_DB=TREMBL Accession /GB=D71338 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk67g4 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 90      6grp_high1_10_10 > 19      4grp_highest_8_8 > 14      4grp_high_8_8 > 14      6grp_highest_nonorm > 38      6grp_total > 29      4grp_total > 09      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13218
1 2 3 4 range
A 6140.9
(-3)
P 		8740.8
(-1.6)
P 		8155.6
(-1.9)
P 		17201.6
(3)
P 		11061
B 6400.4
(-3)
P 		7102.3
(-2.7)
P 		8721.1
(-1.9)
P 		18698.6
(3)
P 		12298
C 6167
(-3)
P 		7622
(-2.3)
P 		8461.5
(-2)
P 		19359.2
(3)
P 		13192
avr 6236.1
(-3) 		7821.7
(-2.2) 		8446.1
(-1.9) 		18419.8
(3) 		12184

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3446
1 2 3 4 5 6 range
A 6643.5
(2.9)
P 		5345.6
(-0.7)
P 		6674.9
(3)
P 		5747.6
(0.4)
P 		6252.3
(1.8)
P 		4513.3
(-3)
P 		2162
B 7211.5
(1.7)
P 		6941.6
(1.1)
P 		7626.4
(2.8)
P 		5337.2
(-3)
P 		7710.9
(3)
P 		6133.7
(-1)
P 		2374
C 6118.5
(0.7)
P 		6461.1
(1.3)
P 		4636.5
(-2.3)
P 		4264.6
(-3)
P 		7301
(3)
P 		6707.8
(1.8)
P 		3036
avr 6657.8
(1.7) 		6249.4
(0.4) 		6312.6
(0.6) 		5116.5
(-3) 		7088.1
(3) 		5784.9
(-1) 		1972
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2231
1 2 3 4 range
A 2235.9
(0.3)
P 		1897.4
(-3)
P 		2132
(-0.7)
P 		2518
(3)
P 		621
B 2041
(-2.2)
P 		1754.1
(-3)
P 		2020.9
(-2.3)
P 		3984.7
(3)
P 		2231
C 2041.5
(-3)
P 		2191.4
(-2.3)
P 		2949.1
(1.5)
P 		3264.3
(3)
P 		1223
avr 2106.1
(-2.3) 		1947.6
(-3) 		2367.3
(-1.1) 		3255.7
(3) 		1308

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2275
1 2 3 4 5 6 range
A 1224.7
(-2.1)
P 		1901.2
(3)
P 		1453.6
(-0.3)
P 		1457.7
(-0.3)
P 		1886.7
(2.9)
P 		1098.8
(-3)
P 		802
B 2509.3
(0.8)
P 		2310.6
(0.1)
P 		1851.9
(-1.5)
P 		1413.6
(-3)
P 		3132.8
(3)
P 		2287.2
(0)
P 		1719
C 2267.9
(2.6)
P 		1971.5
(1.4)
P 		1180.1
(-1.7)
P 		857.6
(-3)
P 		2362.5
(3)
P 		2245.5
(2.5)
P 		1505
avr 2000.6
(0.7) 		2061.1
(1) 		1495.2
(-1.8) 		1243
(-3) 		2460.7
(3) 		1877.2
(0.1) 		1218
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171884_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28020
Sequence Type Exemplar sequence
Representative Public ID CEK067G4R NCBI
Target Description CEK067G4R_rc /REP_DB=TREMBL Accession /GB=D71338 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk67g4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078203
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078203 NCBI Caenorhabditis elegans F59F4.2 (F59F4.2) mRNA, complete cds. None
F59F4.2.2 ENSEMBL cdna:known chromosome:CEL140:X:15841485:15842288:1 gene:F59F4.2 None
F59F4.2.1 ENSEMBL cdna:known chromosome:CEL140:X:15841489:15842289:1 gene:F59F4.2 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15842157-15842283(+) 52.08 52.08
Public Domain and Genome References
Gene Title
Ensembl F59F4.2
Entrez Gene 181669 Entrez gene
SwissProt Q93838 EMBL-EBI
WormBase CE11548 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03157 Hypothetical protein F59F4.2 [Caenorhabditis elegans] ref|NP_510604.1| F59F4.2 [Caenorhabditis elegans] 1.0E-31
blast CAE69736 Hypothetical protein CBG16007 [Caenorhabditis briggsae] 2.0E-30
blast AAM54169 Hypothetical protein T09A12.5 [Caenorhabditis elegans] ref|NP_741461.1| T09A12.5 [Caenorhabditis elegans] 3.0E-19
Protein Domains
Database ID Description E-Value
Pfam IPR010580 EMBL-EBI Ribosome associated membrane RAMP4 1.7E-45
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510604.1 1 36-58
F59F4.2.2 1 36-58
F59F4.2.1 1 36-58
Sequence
Target Sequence 
>C. ELEGANS:171884_X_AT
taaatttattgcaaactggttattaannnnnnnnnnnnnnnnnnnnnnnnaatccccntt
tatnnnnnnnnnnnnnnnnnnnnnnnnttcaaccttgttnnnnnaattcgcatcatgttg
ataatgtgataatactcgctagtgcgatcaagtagagattccccgggc

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAAATTTATTGCAAACTGGTTATTA 560 641 39 Antisense
AATTCGCATCATGTTGATAATGTGA 704 177 143 Antisense
GATAATGTGATAATACTCGCTAGTG 414 423 158 Antisense
AATGTGATAATACTCGCTAGTGCGA 517 163 161 Antisense
GTGATAATACTCGCTAGTGCGATCA 105 485 164 Antisense
GATAATACTCGCTAGTGCGATCAAG 117 423 166 Antisense
AATACTCGCTAGTGCGATCAAGTAG 415 171 169 Antisense
AGTGCGATCAAGTAGAGATTCCCCG 530 59 179 Antisense
GTGCGATCAAGTAGAGATTCCCCGG 539 477 180 Antisense
TGCGATCAAGTAGAGATTCCCCGGG 675 549 181 Antisense
GCGATCAAGTAGAGATTCCCCGGGC 420 291 182 Antisense
Sequence Source Affymetrix Proprietary Database