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[171883_x_at]

Description CEK060F6R_rc /REP_DB=TREMBL Accession /GB=D71013 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk60f6 : 3prime end, single read.
Cluster 6grp_total > 89      4grp_total > 0      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 16.6
(-0.6)
A 		2.5
(-3)
A 		10.6
(-1.6)
A 		38.4
(3)
A 		36
B 14.3
(-1.9)
A 		4.8
(-3)
A 		58.3
(3)
A 		19.8
(-1.3)
A 		54
C 19.5
(-1.4)
A 		31.7
(0.7)
A 		10.5
(-3)
A 		44.9
(3)
A 		34
avr 16.8
(-1.9) 		13
(-3) 		26.5
(0.8) 		34.4
(3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 4.4
(-2.7)
A 		4.4
(-2.7)
A 		14.6
(-1.7)
A 		1.5
(-3)
A 		23.3
(-0.8)
A 		61.9
(3)
P 		60
B 19.3
(-1.3)
A 		2.5
(-3)
A 		6.3
(-2.6)
A 		5.7
(-2.7)
A 		61.6
(3)
P 		59.1
(2.7)
P 		59
C 1.5
(-3)
A 		23.4
(-0.5)
A 		30.7
(0.4)
A 		4.3
(-2.7)
A 		27
(-0.1)
A 		53.4
(3)
P 		52
avr 8.4
(-2.5) 		10.1
(-2.3) 		17.2
(-1.5) 		3.8
(-3) 		37.3
(0.7) 		58.1
(3) 		54
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 6
(3)
A 		0.5
(-3)
A 		2.8
(-0.5)
A 		5.6
(2.6)
A 		6
B 4.6
(-1.3)
A 		1.2
(-3)
A 		13.5
(3)
A 		4.2
(-1.5)
A 		12
C 6.4
(0)
A 		9.1
(3)
A 		3.7
(-3)
A 		7.6
(1.3)
A 		5
avr 5.7
(1.1) 		3.6
(-3) 		6.7
(3) 		5.8
(1.3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 0.8
(-2.8)
A 		1.6
(-2.5)
A 		3.2
(-1.9)
A 		0.4
(-3)
A 		7
(-0.3)
A 		15.1
(3)
P 		15
B 6.7
(-1.5)
A 		0.8
(-3)
A 		1.5
(-2.8)
A 		1.5
(-2.8)
A 		25
(3)
P 		22
(2.3)
P 		24
C 0.5
(-3)
A 		7.1
(-0.7)
A 		7.8
(-0.5)
A 		0.9
(-2.9)
A 		8.7
(-0.2)
A 		17.9
(3)
P 		17
avr 2.7
(-2.4) 		3.2
(-2.2) 		4.2
(-1.9) 		0.9
(-3) 		13.6
(1.4) 		18.3
(3) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171883_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27892
Sequence Type Exemplar sequence
Representative Public ID CEK060F6R NCBI
Target Description CEK060F6R_rc /REP_DB=TREMBL Accession /GB=D71013 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk60f6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061888
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000019499 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2525350:2529245:-1 None
SNAP00000019487 ENSEMBL cdna:SNAP chromosome:CEL140:II:2525350:2532997:-1 None
K02F6.7 ENSEMBL cdna:known chromosome:CEL140:II:2525235:2529245:-1 gene:K02F6.7 A 
NM_061888 NCBI Caenorhabditis elegans K02F6.7 (K02F6.7) mRNA, complete cds. A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2525233-2526168(-) 94.71 94.71
Public Domain and Genome References
Gene Title
Ensembl K02F6.7
Entrez Gene 173604 Entrez gene
SwissProt O16628 EMBL-EBI
WormBase CE36182 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB66108 Hypothetical protein K02F6.7 [Caenorhabditis elegans] ref|NP_494289.2| K02F6.7 [Caenorhabditis elegans] 0.0
blast AAA82329 Hypothetical protein C04E7.2 [Caenorhabditis elegans] ref|NP_508090.1| C04E7.2 [Caenorhabditis elegans] sp|Q11193|YX22_CAEEL Hypothetical protein C04E7.2 in chromosome X 1.0E-39
blast T15405 hypothetical protein C04E7.2 - Caenorhabditis elegans 4.0E-36
Sequence
Target Sequence 
>C. ELEGANS:171883_X_AT
ataccgagcacattgcacatttgtatgtgcttagactggacaaagacggatctacatgca
tgtcgcagatcccgcgtcttgcaccctgctggattcgccgatggcgtcaaccctcctatc
gaatattctgatgcttttgctaaagatgctgatatagagattcagataagccagcttgag
gagacgctcgataatctcgcttgtgagcaggattccac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATACCGAGCACATTGCACATTTGTA 370 23 16 Antisense
ACATTTGTATGTGCTTAGACTGGAC 41 105 32 Antisense
GGACAAAGACGGATCTACATGCATG 274 525 53 Antisense
TCTACATGCATGTCGCAGATCCCGC 594 605 66 Antisense
TGGATTCGCCGATGGCGTCAACCCT 12 551 105 Antisense
TCAACCCTCCTATCGAATATTCTGA 680 629 122 Antisense
TCGAATATTCTGATGCTTTTGCTAA 427 601 134 Antisense
ATAGAGATTCAGATAAGCCAGCTTG 41 23 169 Antisense
AAGCCAGCTTGAGGAGACGCTCGAT 271 149 183 Antisense
GACGCTCGATAATCTCGCTTGTGAG 395 381 198 Antisense
ATCTCGCTTGTGAGCAGGATTCCAC 299 33 209 Antisense
Sequence Source Affymetrix Proprietary Database