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[171882_x_at]

Description CEC5603_rc /REP_DB=TREMBL Accession /GB=C10560 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk149a12 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 51      6grp_high1_10_10 > 26      4grp_highest_8_8 > 17      4grp_high_8_8 > 61      6grp_highest_nonorm > 13      6grp_total > 16      4grp_total > 59      6grp_highest_sub > De      6grp_cgc > 22      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1959
1 2 3 4 range
A 2993.1
(1)
P 		3079.7
(1.3)
P 		3524.8
(3)
P 		1919.2
(-3)
P 		1606
B 2818.5
(-0.3)
P 		3383.1
(1.6)
P 		3768.6
(3)
P 		2061.7
(-3)
P 		1707
C 2738.3
(0.6)
P 		3122.8
(2.1)
P 		3340.9
(3)
P 		1809.5
(-3)
P 		1531
avr 2850
(0.4) 		3195.2
(1.7) 		3544.8
(3) 		1930.1
(-3) 		1615

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1393
1 2 3 4 5 6 range
A 3504.1
(2.4)
P 		3629.4
(3)
P 		2502.6
(-2.2)
P 		2320.1
(-3)
P 		2728.8
(-1.1)
P 		2739.9
(-1.1)
P 		1309
B 2819.3
(1.9)
P 		2944.7
(3)
P 		2236.4
(-3)
P 		2672.3
(0.7)
P 		2395.5
(-1.7)
P 		2583.2
(-0.1)
P 		708
C 3457.3
(3)
P 		2709.1
(-1)
P 		3328.2
(2.3)
P 		2333.1
(-3)
P 		2887.1
(-0)
P 		2394.9
(-2.7)
P 		1124
avr 3260.2
(3) 		3094.4
(1.8) 		2689.1
(-1.2) 		2441.8
(-3) 		2670.5
(-1.3) 		2572.7
(-2) 		818
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 884
1 2 3 4 range
A 1089.8
(3)
P 		668.5
(-0.1)
P 		921.4
(1.8)
P 		280.9
(-3)
P 		809
B 898.8
(3)
P 		835.5
(2.2)
P 		873.3
(2.7)
P 		439.3
(-3)
P 		460
C 906.4
(1.2)
P 		897.8
(1.1)
P 		1164.4
(3)
P 		305.1
(-3)
P 		859
avr 965
(2.8) 		800.6
(1.3) 		986.4
(3) 		341.8
(-3) 		645

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 822
1 2 3 4 5 6 range
A 646
(-2.2)
P 		1290.8
(3)
P 		545
(-3)
P 		588.4
(-2.7)
P 		823.4
(-0.8)
P 		667.1
(-2)
P 		746
B 981
(3)
P 		980.2
(3)
P 		543.1
(-3)
P 		707.8
(-0.7)
P 		973.3
(2.9)
P 		963.3
(2.8)
P 		438
C 1281.5
(3)
P 		826.6
(-0.4)
P 		847.1
(-0.2)
P 		469.2
(-3)
P 		934.2
(0.4)
P 		801.7
(-0.5)
P 		812
avr 969.5
(2.1) 		1032.5
(3) 		645.1
(-2.2) 		588.5
(-3) 		910.3
(1.3) 		810.7
(0) 		444
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171882_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27847
Sequence Type Exemplar sequence
Representative Public ID CEC5603 NCBI
Target Description CEC5603_rc /REP_DB=TREMBL Accession /GB=C10560 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk149a12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069399(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069399 NCBI Caenorhabditis elegans UBA (human ubiquitin) related family member (uba-1) (uba-1) mRNA, complete cds. 11/11 A 
C47E12.5.2 ENSEMBL cdna:known chromosome:CEL140:IV:9989428:9994917:-1 gene:C47E12.5 11/11 A 
C47E12.5.3 ENSEMBL cdna:known chromosome:CEL140:IV:9989645:9995006:-1 gene:C47E12.5 11/11 A 
C47E12.5.1 ENSEMBL cdna:known chromosome:CEL140:IV:9989645:9994917:-1 gene:C47E12.5 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000021567 7/11 Cross Hyb Matching Probes None
GENEFINDER00000021589 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9989716-9990025(-) 86.13 86.13
Public Domain and Genome References
Ensembl C47E12.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93101 Hypothetical protein C47E12.5a [Caenorhabditis elegans] ref|NP_501800.1| UBA (human ubiquitin) related family member (uba-1) [Caenorhabditis elegans] 0.0
blast CAJ30225 Hypothetical protein C47E12.5b [Caenorhabditis elegans] 0.0
blast CAE59952 Hypothetical protein CBG03440 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000127 EMBL-EBI Ubiquitin-activating enzyme repeat 2.8E-41
Pfam IPR000594 EMBL-EBI UBA/THIF-type NAD/FAD binding fold 3.1E-42
Pfam IPR000594 EMBL-EBI UBA/THIF-type NAD/FAD binding fold 3.9E-63
Sequence
Target Sequence 
>C. ELEGANS:171882_X_AT
gaagaaatcacttcatccttctgttcacncnttggttctcgagccaatgatgtccgatcc
agacggtgaagatgtcgaagttccatacattcgctactnnnnnnnnnnnnnnnnnnnnnn
naatgtttgtatgtgtctctctgtccccgtcttcatgagtcatgctactctttatcattt
tatcgctccc

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGAAATCACTTCATCCTTCTGTT 83 341 23 Antisense
AGAAATCACTTCATCCTTCTGTTCA 467 71 25 Antisense
TGGTTCTCGAGCCAATGATGTCCGA 265 551 55 Antisense
GAGCCAATGATGTCCGATCCAGACG 363 385 63 Antisense
GATGTCCGATCCAGACGGTGAAGAT 485 409 71 Antisense
GACGGTGAAGATGTCGAAGTTCCAT 82 377 84 Antisense
GTCGAAGTTCCATACATTCGCTACT 226 475 96 Antisense
AATGTTTGTATGTGTCTCTCTGTCC 32 165 144 Antisense
TCCCCGTCTTCATGAGTCATGCTAC 346 597 166 Antisense
AGTCATGCTACTCTTTATCATTTTA 27 63 180 Antisense
TACTCTTTATCATTTTATCGCTCCC 206 647 188 Antisense
Sequence Source Affymetrix Proprietary Database