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[171880_x_at]

Description CEK099C4R_rc /REP_DB=TREMBL Accession /GB=D66373 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk99c4 : 3prime end, single read.
Cluster 6grp_total > 98      4grp_total > 0      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 136
1 2 3 4 range
A 29.9
(-1.9)
A 		5.2
(-3)
A 		28.4
(-2)
A 		141.1
(3)
A 		136
B 67.4
(3)
A 		12.9
(-2.8)
A 		58.9
(2.1)
A 		11.5
(-3)
A 		56
C 24.6
(-3)
A 		47.4
(-1.5)
A 		81.1
(0.7)
A 		116
(3)
A 		91
avr 40.6
(-1.3) 		21.8
(-3) 		56.1
(0) 		89.5
(3) 		68

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1667
1 2 3 4 5 6 range
A 41.5
(-2.9)
A 		13.3
(-3)
A 		54.5
(-2.8)
A 		152.7
(-2.5)
P 		874.7
(0.4)
P 		1545.3
(3)
P 		1532
B 48.5
(-2.8)
A 		41.8
(-2.9)
A 		5.7
(-3)
A 		180.4
(-2.3)
P 		1234
(1.7)
P 		1585.5
(3)
P 		1580
C 49.7
(-2.9)
A 		43.6
(-2.9)
A 		17.6
(-3)
A 		123.6
(-2.6)
M 		1123.7
(1)
P 		1672.9
(3)
P 		1655
avr 46.6
(-2.9) 		32.9
(-3) 		25.9
(-3) 		152.2
(-2.5) 		1077.5
(1) 		1601.2
(3) 		1575
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 10.9
(0)
A 		1.1
(-3)
A 		7.4
(-1.1)
A 		20.7
(3)
A 		20
B 21.5
(3)
A 		3.2
(-2.8)
A 		13.7
(0.5)
A 		2.5
(-3)
A 		19
C 8.1
(-3)
A 		13.6
(-1.4)
A 		28.3
(3)
A 		19.6
(0.4)
A 		20
avr 13.5
(1.3) 		6
(-3) 		16.5
(3) 		14.3
(1.7) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 590
1 2 3 4 5 6 range
A 7.7
(-3)
A 		4.7
(-3)
A 		11.9
(-2.9)
A 		38.7
(-2.5)
P 		263.9
(1.2)
P 		376.2
(3)
P 		372
B 16.9
(-2.8)
A 		13.9
(-2.9)
A 		1.4
(-3)
A 		47.8
(-2.5)
P 		501.3
(2.1)
P 		591.2
(3)
P 		590
C 18.4
(-2.8)
A 		13.3
(-2.9)
A 		4.5
(-3)
A 		24.9
(-2.8)
M 		363.6
(0.9)
P 		560
(3)
P 		556
avr 14.3
(-2.9) 		10.6
(-2.9) 		5.9
(-3) 		37.1
(-2.6) 		376.3
(1.4) 		509.1
(3) 		503
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171880_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28015
Sequence Type Exemplar sequence
Representative Public ID CEK099C4R NCBI
Target Description CEK099C4R_rc /REP_DB=TREMBL Accession /GB=D66373 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk99c4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069362
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000004271 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9844033:9844245:1 None
SNAP00000004248 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9844033:9844245:1 None
NM_069362 NCBI Caenorhabditis elegans K07F5.5 (K07F5.5) mRNA, complete cds. A 
K07F5.5.1 ENSEMBL cdna:known chromosome:CEL140:IV:9844033:9844590:1 gene:K07F5.5 A 
K07F5.5.2 ENSEMBL cdna:known chromosome:CEL140:IV:9844033:9844590:1 gene:K07F5.5 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_059358 1/11 Cross Hyb Matching Probes None
NM_068329 3/11 Cross Hyb Matching Probes A 
NM_062470 2/11 Cross Hyb Matching Probes A 
NM_062474 3/11 Cross Hyb Matching Probes A 
SNAP00000005480 2/11 Cross Hyb Matching Probes None
GENEFINDER00000005501 2/11 Cross Hyb Matching Probes None
SNAP00000040845 2/11 Cross Hyb Matching Probes None
GENEFINDER00000040847 2/11 Cross Hyb Matching Probes None
SNAP00000024206 2/11 Cross Hyb Matching Probes None
SNAP00000024208 3/11 Cross Hyb Matching Probes None
GENEFINDER00000024211 2/11 Cross Hyb Matching Probes None
GENEFINDER00000024214 4/11 Cross Hyb Matching Probes None
T23B7.1 2/11 Cross Hyb Matching Probes A 
F11G11.8 2/11 Cross Hyb Matching Probes None
C24D10.7 2/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9844017-9844223(+) 53.42 53.42
Public Domain and Genome References
Gene Title
Ensembl K07F5.5
Entrez Gene 177831 Entrez gene
WormBase CE06120 Wormbase
Functional Annotations
Protein Domains
Database ID Description E-Value
Pfam IPR008498 EMBL-EBI Caenorhabditis elegans protein of unknown function DUF780 1.9E-50
Sequence
Target Sequence 
>C. ELEGANS:171880_X_AT
ggaacaactccaagcgaaagacaacgatggcggacaagtcggcttacatgggcgctggtg
gctatggatccggatacatgggatccaacgcttcatcgtcgggatatgcccgcgaagact
atgcacaaggaggaaatggtggtggtggacagcagcagaaccaaggatccggaggaaaca
ccaacccaggtggacaggtcttcaaggcccgtactgaccaatcgtgctaccttgggccat
aagaagatcgactcaagaagagccagtcgcccaaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAACAACTCCAAGCGAAAGACAAC 281 529 67 Antisense
GATGGCGGACAAGTCGGCTTACATG 140 407 92 Antisense
TACATGGGCGCTGGTGGCTATGGAT 641 643 111 Antisense
GATACATGGGATCCAACGCTTCATC 614 423 139 Antisense
AACGCTTCATCGTCGGGATATGCCC 623 145 153 Antisense
GGATATGCCCGCGAAGACTATGCAC 13 511 168 Antisense
GACAGCAGCAGAACCAAGGATCCGG 695 367 214 Antisense
CAGGTGGACAGGTCTTCAAGGCCCG 457 207 253 Antisense
TACTGACCAATCGTGCTACCTTGGG 491 647 278 Antisense
TGGGCCATAAGAAGATCGACTCAAG 554 541 299 Antisense
CTCAAGAAGAGCCAGTCGCCCAAAG 269 227 318 Antisense
Sequence Source Affymetrix Proprietary Database