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[171879_x_at]

Description CEK071E8R_rc /REP_DB=TREMBL Accession /GB=D65958 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk71e8 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 53      6grp_high1_10_10 > 35      4grp_highest_8_8 > 25      4grp_high_8_8 > 60      6grp_highest_nonorm > 86      6grp_total > 36      4grp_total > 60      6grp_highest_sub > 02      6grp_high1_sub > 02      6grp_total_sub > Cup      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1463
1 2 3 4 range
A 1595.1
(1.9)
P 		1875
(3)
P 		1643.2
(2)
P 		411.7
(-3)
P 		1463
B 1805.5
(3)
P 		1457
(1.2)
P 		1755.4
(2.7)
P 		644.4
(-3)
P 		1161
C 1413
(0.9)
P 		1460.5
(1.1)
P 		1801.1
(3)
P 		700.2
(-3)
P 		1101
avr 1604.5
(2.3) 		1597.5
(2.3) 		1733.2
(3) 		585.4
(-3) 		1148

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1028
1 2 3 4 5 6 range
A 957.7
(-1.3)
P 		1493.7
(3)
P 		816.5
(-2.4)
P 		746.1
(-3)
P 		1021.4
(-0.8)
P 		1135.5
(0.1)
P 		748
B 1060.9
(0.2)
P 		1321.1
(3)
P 		781.1
(-2.8)
P 		763.3
(-3)
P 		943.6
(-1.1)
P 		1267.9
(2.4)
P 		558
C 1050.4
(2.4)
P 		1114.1
(3)
P 		1022.1
(2.1)
P 		465.4
(-3)
P 		808.6
(0.2)
P 		954.9
(1.5)
P 		649
avr 1023
(0.4) 		1309.6
(3) 		873.2
(-1) 		658.3
(-3) 		924.5
(-0.5) 		1119.4
(1.2) 		651
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 567
1 2 3 4 range
A 580.8
(3)
P 		407
(1)
P 		429.6
(1.3)
P 		60.3
(-3)
P 		521
B 575.8
(3)
P 		359.8
(0)
P 		406.8
(0.7)
P 		137.3
(-3)
P 		439
C 467.7
(1.1)
P 		419.9
(0.6)
P 		627.7
(3)
P 		118.1
(-3)
P 		510
avr 541.4
(3) 		395.6
(1) 		488
(2.3) 		105.2
(-3) 		436

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 438
1 2 3 4 5 6 range
A 176.5
(-3)
P 		531.2
(3)
P 		177.8
(-3)
P 		189.2
(-2.8)
P 		308.2
(-0.8)
P 		276.5
(-1.3)
P 		355
B 369.1
(0.8)
P 		439.7
(2.3)
P 		189.7
(-3)
P 		202.2
(-2.7)
P 		383.4
(1.1)
P 		472.8
(3)
P 		283
C 389.3
(3)
P 		340
(2)
P 		260.1
(0.4)
P 		93.6
(-3)
P 		261.7
(0.4)
P 		319.7
(1.6)
P 		296
avr 311.6
(0.3) 		437
(3) 		209.2
(-2) 		161.7
(-3) 		317.8
(0.4) 		356.3
(1.2) 		275
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171879_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27737
Sequence Type Exemplar sequence
Representative Public ID CEK071E8R NCBI
Target Description CEK071E8R_rc /REP_DB=TREMBL Accession /GB=D65958 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk71e8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061579
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000040932 ENSEMBL cdna:SNAP chromosome:CEL140:II:1490132:1500332:-1 None
NM_061579 NCBI Caenorhabditis elegans H17B01.4a (H17B01.4) mRNA, complete cds. A 
H17B01.4a ENSEMBL cdna:known chromosome:CEL140:II:1489905:1500332:-1 gene:H17B01.4 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000040936 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1489970-1490243(-) 54.96 54.96
Public Domain and Genome References
Ensembl H17B01.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK31541 Hypothetical protein H17B01.4a [Caenorhabditis elegans] ref|NP_493980.1| H17B01.4a [Caenorhabditis elegans] 0.0
blast T32814 hypothetical protein H17B01.4 - Caenorhabditis elegans 0.0
blast CAE62887 Hypothetical protein CBG07074 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:171879_X_AT
ggagggatttgttctttacgagacttgtaccgtcggggacttttgatatattgaaggacg
atttcgaccatgtgctcatttccctggtgctcaccggccttgtcgttggctcctacgtct
caaagcgtctggctcgatcaaatgctctcgcctcacagtggtcttaatctagtctctctc
tctcccatttgaaaatctcaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGGGATTTGTTCTTTACGAGACT 589 515 27 Antisense
GTTCTTTACGAGACTTGTACCGTCG 120 443 37 Antisense
TACGAGACTTGTACCGTCGGGGACT 98 647 43 Antisense
ACCGTCGGGGACTTTTGATATATTG 615 87 55 Antisense
GAAGGACGATTTCGACCATGTGCTC 78 335 79 Antisense
ACGATTTCGACCATGTGCTCATTTC 101 93 84 Antisense
TCTCAAAGCGTCTGGCTCGATCAAA 537 611 144 Antisense
TCTGGCTCGATCAAATGCTCTCGCC 466 607 154 Antisense
TCTCGCCTCACAGTGGTCTTAATCT 472 611 172 Antisense
CAGTGGTCTTAATCTAGTCTCTCTC 117 209 182 Antisense
CTCTCTCCCATTTGAAAATCTCAAT 521 231 204 Antisense
Sequence Source Affymetrix Proprietary Database