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[171878_s_at]

Description CEK098A2R_rc /REP_DB=TREMBL Accession /GB=D72374 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk98a2 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 85      6grp_high1_10_10 > 58      4grp_highest_8_8 > 06      4grp_high_8_8 > 21      6grp_highest_nonorm > 47      6grp_total > 58      4grp_total > 26      6grp_highest_sub > Cu      6grp_cgc > 28      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1492
1 2 3 4 range
A 3760.6
(-0.2)
P 		4123.6
(3)
P 		3672.3
(-1)
P 		3446.9
(-3)
P 		677
B 3829.6
(-3)
P 		4227.1
(-0.9)
P 		4509.3
(0.7)
P 		4939.3
(3)
P 		1110
C 3655.6
(-2.2)
P 		3988.7
(-0.6)
P 		3479.1
(-3)
P 		4775.1
(3)
P 		1296
avr 3748.6
(-3) 		4113.1
(0.4) 		3886.9
(-1.7) 		4387.1
(3) 		639

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2130
1 2 3 4 5 6 range
A 3346.1
(2.5)
P 		3258.6
(1.9)
P 		3209
(1.6)
P 		2519.9
(-3)
P 		3258.6
(1.9)
P 		3424.7
(3)
P 		905
B 3878.8
(1)
P 		3646.3
(0.1)
P 		3397.9
(-0.9)
P 		3258
(-1.5)
P 		2884.6
(-3)
P 		4359
(3)
P 		1474
C 3454.6
(-0.8)
P 		3566.8
(-0.5)
P 		2783.7
(-3)
P 		2815.7
(-2.9)
P 		3574.5
(-0.5)
P 		4650.1
(3)
P 		1866
avr 3559.8
(0.3) 		3490.6
(-0.1) 		3130.2
(-1.8) 		2864.5
(-3) 		3239.2
(-1.2) 		4144.6
(3) 		1280
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 865
1 2 3 4 range
A 1369.2
(3)
P 		895.1
(-0.3)
P 		960
(0.2)
P 		504.6
(-3)
P 		865
B 1221.2
(3)
P 		1044
(-3)
P 		1044.9
(-3)
P 		1052.6
(-2.7)
P 		177
C 1210.1
(3)
P 		1146.8
(2)
P 		1212.6
(3)
P 		805.2
(-3)
P 		407
avr 1266.8
(3) 		1028.6
(0) 		1072.5
(0.6) 		787.5
(-3) 		479

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1059
1 2 3 4 5 6 range
A 616.8
(-3)
P 		1158.9
(3)
P 		698.8
(-2.1)
P 		639.1
(-2.8)
P 		983.3
(1.1)
P 		833.8
(-0.6)
P 		542
B 1349.6
(0.9)
P 		1213.7
(-0.1)
P 		825.1
(-3)
P 		862.9
(-2.7)
P 		1172
(-0.4)
P 		1625.4
(3)
P 		800
C 1280.5
(1.3)
P 		1088.3
(0.2)
P 		708.5
(-2.1)
P 		566.2
(-3)
P 		1156.7
(0.6)
P 		1556.7
(3)
P 		991
avr 1082.3
(0.6) 		1153.6
(1.3) 		744.1
(-2.5) 		689.4
(-3) 		1104
(0.8) 		1338.6
(3) 		649
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171878_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27741
Sequence Type Exemplar sequence
Representative Public ID CEK098A2R NCBI
Target Description CEK098A2R_rc /REP_DB=TREMBL Accession /GB=D72374 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk98a2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064569(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064569 NCBI Caenorhabditis elegans HMG family member (hmg-1.1) (hmg-1.1) mRNA, complete cds. 11/11 A 
Y48B6A.14.1 ENSEMBL cdna:known chromosome:CEL140:II:14250584:14251343:1 gene:Y48B6A.14 11/11 None
Y48B6A.14.2 ENSEMBL cdna:known chromosome:CEL140:II:14250586:14251343:1 gene:Y48B6A.14 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Gene Title
Gene Symbol hmg-1.1
Ensembl Y48B6A.14
Entrez Gene 175081 Entrez gene
SwissProt Q9U2A0 EMBL-EBI
WormBase CE29377 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB54448 Hypothetical protein Y48B6A.14 [Caenorhabditis elegans] ref|NP_496970.1| HMG family member (hmg-1.1) [Caenorhabditis elegans] gb|AAC78598.1| high mobility group protein 1.1 [Caenorhabditis elegans] 3.0E-49
blast CAE73247 Hypothetical protein CBG20663 [Caenorhabditis briggsae] 8.0E-42
blast AAA16307 high mobility group protein 6.0E-22
Protein Domains
Database ID Description E-Value
Pfam IPR000910 EMBL-EBI HMG1/2 (high mobility group) box 8.9E-23
Sequence
Target Sequence 
>C. ELEGANS:171878_S_AT
aaactcctgaattttatccattctgttgtacttttcgagcgatttcgaatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAACTCCTGAATTTTATCCATTCTG 293 127 164 Antisense
ACTCCTGAATTTTATCCATTCTGTT 476 99 166 Antisense
AATTTTATCCATTCTGTTGTACTTT 547 175 173 Antisense
TTTTATCCATTCTGTTGTACTTTTC 299 675 175 Antisense
TTATCCATTCTGTTGTACTTTTCGA 16 681 177 Antisense
ATCCATTCTGTTGTACTTTTCGAGC 11 41 179 Antisense
CCATTCTGTTGTACTTTTCGAGCGA 606 269 181 Antisense
ATTCTGTTGTACTTTTCGAGCGATT 203 11 183 Antisense
TCTGTTGTACTTTTCGAGCGATTTC 525 607 185 Antisense
TGTTGTACTTTTCGAGCGATTTCGA 272 563 187 Antisense
TGTACTTTTCGAGCGATTTCGAATC 407 553 190 Antisense
Sequence Source Affymetrix Proprietary Database