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[171877_x_at] protein tyrosine phosphatase

Description CEK037H6R_rc /REP_DB=TREMBL Accession /GB=D33902 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk37h6 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 93      6grp_high1_10_10 > 49      4grp_highest_8_8 > 53      4grp_high_8_8 > 09      6grp_highest_nonorm > 86      6grp_total > 49      4grp_total > 23      6grp_highest_sub > Cu      6grp_cgc > 08      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2153
1 2 3 4 range
A 2169.3
(3)
P 		761
(-2.3)
P 		588
(-3)
P 		2087.5
(2.7)
P 		1581
B 2740.6
(3)
P 		823.6
(-2.9)
P 		803.4
(-3)
P 		2071.1
(0.9)
P 		1937
C 2539
(3)
P 		896.3
(-2.3)
P 		691.6
(-3)
P 		1979.5
(1.2)
P 		1847
avr 2483
(3) 		827
(-2.6) 		694.3
(-3) 		2046
(1.5) 		1789

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1195
1 2 3 4 5 6 range
A 943.4
(-0.3)
P 		1085.1
(0.9)
P 		623.5
(-3)
P 		1001.7
(0.2)
P 		975.4
(-0.1)
P 		1339.8
(3)
P 		716
B 1278.3
(1)
P 		932.3
(-1.7)
P 		759.2
(-3)
P 		827.7
(-2.5)
P 		987
(-1.2)
P 		1532.4
(3)
P 		773
C 1818.3
(3)
P 		774.2
(-2.4)
P 		698.4
(-2.8)
P 		655.6
(-3)
P 		1298
(0.3)
P 		1028.5
(-1.1)
P 		1163
avr 1346.7
(3) 		930.5
(-0.8) 		693.7
(-3) 		828.3
(-1.8) 		1086.8
(0.6) 		1300.2
(2.6) 		653
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 720
1 2 3 4 range
A 789.8
(3)
P 		165.2
(-2.9)
P 		153.7
(-3)
P 		305.6
(-1.6)
P 		636
B 873.9
(3)
P 		203.4
(-2.8)
P 		186.2
(-3)
P 		441.4
(-0.8)
P 		688
C 840.5
(3)
P 		257.7
(-2.8)
P 		241.1
(-3)
P 		333.8
(-2.1)
P 		599
avr 834.7
(3) 		208.8
(-2.9) 		193.7
(-3) 		360.3
(-1.4) 		641

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 542
1 2 3 4 5 6 range
A 173.9
(-2.1)
P 		385.9
(3)
P 		135.8
(-3)
P 		254.1
(-0.2)
P 		294.3
(0.8)
P 		326.2
(1.6)
P 		250
B 444.8
(1)
P 		310.3
(-1)
P 		184.4
(-3)
P 		219.2
(-2.5)
P 		401
(0.4)
P 		571.4
(3)
P 		387
C 674
(3)
P 		236.2
(-1.8)
P 		177.8
(-2.5)
P 		131.8
(-3)
P 		420
(0.2)
P 		344.3
(-0.6)
P 		542
avr 430.9
(3) 		310.8
(0.3) 		166
(-3) 		201.7
(-2.2) 		371.8
(1.7) 		414
(2.6) 		265
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171877_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27733
Sequence Type Exemplar sequence
Representative Public ID CEK037H6R NCBI
Target Description CEK037H6R_rc /REP_DB=TREMBL Accession /GB=D33902 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk37h6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065844
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
B0244.2 ENSEMBL cdna:known chromosome:CEL140:III:5755487:5765764:1 gene:B0244.2 None
SNAP00000015996 ENSEMBL cdna:SNAP chromosome:CEL140:III:5761082:5765533:1 None
GENEFINDER00000015998 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5761094:5765533:1 None
NM_065844 NCBI Caenorhabditis elegans related to Islet cell Diabetes Autoantigen family member (ida-1) (ida-1) mRNA, complete cds. A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5764890-5765743(+) 97.43 97.43
Public Domain and Genome References
Gene Title protein tyrosine phosphatase
Gene Symbol ida-1
Ensembl B0244.2
Entrez Gene 175807 Entrez gene
SwissProt Q09962 EMBL-EBI
WormBase CE31867 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6470 protein amino acid dephosphorylation inferred from electronic annotation QuickGO AmiGO
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4289 subtilase activity inferred from electronic annotation QuickGO AmiGO
4725 protein tyrosine phosphatase activity inferred from electronic annotation QuickGO AmiGO
5001 transmembrane receptor protein tyrosine phosphatase activity inferred from sequence similarity QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAD31046 Related to islet cell diabetes autoantigen protein 1 [Caenorhabditis elegans] emb|CAB52188.1| IDA-1 protein [Caenorhabditis elegans] ref|NP_498245.2| related to Islet cell Diabetes Autoantigen family member (ida-1) [Caenorhabditis elegans] gb|AAK14908.1| IA2 [Caenorhabditis elegans] 0.0
blast CAE64402 Hypothetical protein CBG09094 [Caenorhabditis briggsae] 0.0
blast A88466 protein B0244.2 [imported] - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 3.7E-78
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 8.5E-75
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 3.7E-78
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498245.2 1 399-421
B0244.2 1 399-421
SNAP00000015996 1 396-418
GENEFINDER00000015998 1 392-414
Sequence
Target Sequence 
>C. ELEGANS:171877_X_AT
gtcgccaccgttgaacatttaagggaccagagagatggagtggtagcgaccggagatcaa
ttcanactcgcgtatggatgtgtcgcccaagaagtaaaccatcttctaaagtcaatcnnn
nnnnnnnnnnnnnnnnnnnncgcaatcgttgttccccactacacaagagagagttttgtn
nnnnnatatnnnnnnagccgccgcccattnnnnnagcccatttgatctcttgaaacattc
ctaattttatctcaaaatattgagatttcatattatttcatg

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCGCCACCGTTGAACATTTAAGGG 283 475 19 Antisense
AGAGAGATGGAGTGGTAGCGACCGG 672 67 47 Antisense
GTGGTAGCGACCGGAGATCAATTCA 388 487 58 Antisense
ACTCGCGTATGGATGTGTCGCCCAA 686 97 84 Antisense
TGTGTCGCCCAAGAAGTAAACCATC 273 551 97 Antisense
AGTAAACCATCTTCTAAAGTCAATC 427 61 111 Antisense
GTTGTTCCCCACTACACAAGAGAGA 491 435 166 Antisense
GTTCCCCACTACACAAGAGAGAGTT 337 437 169 Antisense
AGCCCATTTGATCTCTTGAAACATT 247 83 233 Antisense
GAAACATTCCTAATTTTATCTCAAA 291 357 250 Antisense
TATTGAGATTTCATATTATTTCATG 584 663 276 Antisense
Sequence Source Affymetrix Proprietary Database