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[171876_at]

Description CEK049D5R_rc /REP_DB=TREMBL Accession /GB=D64318 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk49d5 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 22      6grp_high1_10_10 > 02      4grp_highest_8_8 > 20      4grp_high_8_8 > 31      6grp_highest_nonorm > 71      6grp_total > 24      4grp_total > 32      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 220
1 2 3 4 range
A 270.6
(-2.5)
P 		353.9
(3)
P 		262.4
(-3)
P 		334.3
(1.7)
P 		92
B 234
(0.2)
P 		134.3
(-3)
P 		239.8
(0.4)
P 		321.2
(3)
P 		187
C 237
(-0.6)
P 		240.3
(-0.5)
P 		333.7
(3)
P 		173.4
(-3)
P 		160
avr 247.2
(-2.3) 		242.8
(-3) 		278.6
(3) 		276.3
(2.6) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 249
1 2 3 4 5 6 range
A 293.6
(2.7)
P 		300.5
(3)
P 		232.4
(-0.1)
P 		168.4
(-3)
P 		252.8
(0.8)
P 		268.1
(1.5)
P 		132
B 324.5
(1)
P 		350.6
(3)
P 		330.8
(1.4)
P 		348.1
(2.8)
P 		274.2
(-3)
P 		323.3
(0.9)
P 		76
C 408.8
(2.6)
P 		347.9
(-0.1)
P 		394.9
(2)
P 		417.1
(3)
P 		298.2
(-2.4)
P 		283.8
(-3)
P 		133
avr 342.3
(3) 		333
(2.2) 		319.4
(1) 		311.2
(0.2) 		275.1
(-3) 		291.7
(-1.5) 		67
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 87
1 2 3 4 range
A 98.5
(3)
P 		76.8
(0.4)
P 		68.6
(-0.6)
P 		48.9
(-3)
P 		50
B 74.6
(3)
P 		33.2
(-3)
P 		55.6
(0.2)
P 		68.5
(2.1)
P 		41
C 78.5
(0.4)
P 		69.1
(-0.3)
P 		116.3
(3)
P 		29.2
(-3)
P 		87
avr 83.9
(3) 		59.7
(-1.1) 		80.2
(2.4) 		48.9
(-3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 109
1 2 3 4 5 6 range
A 54.1
(-1.9)
P 		106.9
(3)
P 		50.6
(-2.3)
P 		42.7
(-3)
P 		76.3
(0.1)
P 		65.3
(-0.9)
P 		64
B 112.9
(1.9)
P 		116.7
(2.4)
P 		80.3
(-3)
P 		92.2
(-1.2)
P 		111.4
(1.6)
P 		120.5
(3)
P 		40
C 151.5
(3)
P 		106.2
(-1)
P 		100.5
(-1.5)
P 		83.9
(-3)
P 		96.5
(-1.9)
P 		95
(-2)
P 		68
avr 106.2
(2.4) 		109.9
(3) 		77.1
(-2.3) 		72.9
(-3) 		94.7
(0.5) 		93.6
(0.4) 		37
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 171876_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27802
Sequence Type Exemplar sequence
Representative Public ID CEK049D5R NCBI
Target Description CEK049D5R_rc /REP_DB=TREMBL Accession /GB=D64318 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk49d5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073980(9), NM_073981(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073980 NCBI Caenorhabditis elegans F58G11.1a (F58G11.1) mRNA, complete cds. 9/11 None
NM_073981 NCBI Caenorhabditis elegans F58G11.1b (F58G11.1) mRNA, complete cds. 9/11 None
F58G11.1a ENSEMBL cdna:known chromosome:CEL140:V:13663853:13666826:1 gene:F58G11.1 9/11 A 
F58G11.1b ENSEMBL cdna:known chromosome:CEL140:V:13663883:13666811:1 gene:F58G11.1 9/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13666483-13666759(+) 60.39 60.39
Public Domain and Genome References
Ensembl F58G11.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03150 Hypothetical protein F58G11.1a [Caenorhabditis elegans] ref|NP_506381.1| F58G11.1a [Caenorhabditis elegans] 0.0
blast CAB03156 Hypothetical protein F58G11.1b [Caenorhabditis elegans] ref|NP_506382.1| F58G11.1b [Caenorhabditis elegans] 0.0
blast CAE66267 Hypothetical protein CBG11511 [Caenorhabditis briggsae] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506381.1 1 144-166
NP_506382.1 1 144-166
F58G11.1a 1 144-166
F58G11.1b 1 144-166
Sequence
Target Sequence 
>C. ELEGANS:171876_AT
attttgcatttcttaattgttttcaatctttgtattttctgtaacctaaagannnnncat
tttnnnnngcgcgctctacactctgaataccggtgtctcctccttccactctcgtacccg
ccnnnnntagtcacctcccgcttgaatactattctcgtttctgctctcgaataatgga

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTTGCATTTCTTAATTGTTTTCA 3 15 135 Antisense
TTGCATTTCTTAATTGTTTTCAATC 126 705 138 Antisense
GTTTTCAATCTTTGTATTTTCTGTA 405 449 153 Antisense
CAATCTTTGTATTTTCTGTAACCTA 594 179 158 Antisense
TCTTTGTATTTTCTGTAACCTAAAG 364 561 161 Antisense
CGCTCTACACTCTGAATACCGGTGT 315 253 206 Antisense
ACACTCTGAATACCGGTGTCTCCTC 609 109 212 Antisense
CCTCCCGCTTGAATACTATTCTCGT 561 267 268 Antisense
TGAATACTATTCTCGTTTCTGCTCT 630 575 277 Antisense
ATTCTCGTTTCTGCTCTCGAATAAT 243 11 285 Antisense
CTCGTTTCTGCTCTCGAATAATGGA 252 233 288 Antisense
Sequence Source Affymetrix Proprietary Database