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[171875_x_at]

Description CEK074H3R_rc /REP_DB=TREMBL Accession /GB=D71410 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk74h3 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 86      4grp_high_8_8 > 38      6grp_total > 77      4grp_total > 33      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 139
1 2 3 4 range
A 76.7
(-3)
A 		106.6
(-0.4)
P 		145.8
(3)
P 		143.4
(2.8)
M 		69
B 73.9
(-3)
P 		213.2
(3)
P 		152.6
(0.4)
P 		170
(1.1)
P 		139
C 121.2
(-2)
A 		120.6
(-3)
P 		123
(1)
P 		124.2
(3)
P 		4
avr 90.6
(-3) 		146.8
(3) 		140.5
(2.3) 		145.9
(2.9) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 365
1 2 3 4 5 6 range
A 64.8
(-3)
P 		79.9
(-2.6)
P 		81.5
(-2.6)
P 		93.4
(-2.3)
P 		183.7
(-0.2)
P 		321.5
(3)
P 		257
B 96.2
(-3)
P 		123.2
(-2.5)
P 		129.1
(-2.4)
P 		141.7
(-2.2)
P 		204.5
(-1)
P 		426.2
(3)
P 		330
C 61
(-3)
A 		154.2
(-1.1)
P 		126.2
(-1.7)
P 		108.6
(-2)
A 		173.1
(-0.8)
P 		360.3
(3)
P 		299
avr 74
(-3) 		119.1
(-2.1) 		112.3
(-2.2) 		114.6
(-2.2) 		187.1
(-0.7) 		369.3
(3) 		295
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 27.9
(-0.6)
A 		23.1
(-2.3)
P 		38.1
(3)
P 		21
(-3)
M 		17
B 23.6
(-3)
P 		52.6
(3)
P 		35.4
(-0.6)
P 		36.2
(-0.4)
P 		29
C 40.1
(2.2)
A 		34.7
(0.8)
P 		42.9
(3)
P 		20.9
(-3)
P 		22
avr 30.5
(-0.9) 		36.8
(2.1) 		38.8
(3) 		26
(-3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 147
1 2 3 4 5 6 range
A 11.9
(-3)
P 		28.4
(-1.5)
P 		17.8
(-2.5)
P 		23.7
(-1.9)
P 		55.4
(0.9)
P 		78.3
(3)
P 		66
B 33.5
(-2.9)
P 		41
(-2.5)
P 		31.3
(-3)
P 		37.5
(-2.7)
P 		83.1
(-0.6)
P 		158.9
(3)
P 		128
C 22.6
(-3)
A 		47.1
(-1.5)
P 		32.1
(-2.4)
P 		21.8
(-3)
A 		56
(-0.9)
P 		120.6
(3)
P 		99
avr 22.7
(-3) 		38.8
(-2) 		27.1
(-2.7) 		27.7
(-2.7) 		64.8
(-0.4) 		119.3
(3) 		97
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171875_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27679
Sequence Type Exemplar sequence
Representative Public ID CEK074H3R NCBI
Target Description CEK074H3R_rc /REP_DB=TREMBL Accession /GB=D71410 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk74h3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028265, NM_001028266
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y37E11AL.3a ENSEMBL cdna:known chromosome:CEL140:IV:3694930:3698429:1 gene:Y37E11AL.3 A 
Y37E11AL.3b ENSEMBL cdna:known chromosome:CEL140:IV:3695788:3698355:1 gene:Y37E11AL.3 A 
SNAP00000035934 ENSEMBL cdna:SNAP chromosome:CEL140:IV:3682791:3698262:1 None
GENEFINDER00000035940 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:3694938:3698262:1 None
NM_001028266 NCBI Caenorhabditis elegans Y37E11AL.3b (Y37E11AL.3) mRNA, complete cds. None
NM_001028265 NCBI Caenorhabditis elegans Y37E11AL.3a (Y37E11AL.3) mRNA, complete cds. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3697014-3698369(+) 81.62 81.62
Public Domain and Genome References
Ensembl Y37E11AL.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF59453 Hypothetical protein Y37E11AL.3a [Caenorhabditis elegans] ref|NP_001023436.1| Y37E11AL.3a [Caenorhabditis elegans] 1.0E-148
blast AAF59453 Hypothetical protein Y37E11AL.3a [Caenorhabditis elegans] ref|NP_001023436.1| Y37E11AL.3a [Caenorhabditis elegans] 1.0E-143
blast CAE63764 Hypothetical protein CBG08300 [Caenorhabditis briggsae] 1.0E-110
blast CAE63764 Hypothetical protein CBG08300 [Caenorhabditis briggsae] 1.0E-105
blast AAP13760 Hypothetical protein Y37E11AL.3b [Caenorhabditis elegans] ref|NP_001023437.1| Y37E11AL.3b [Caenorhabditis elegans] 1.0E-92
Sequence
Target Sequence 
>C. ELEGANS:171875_X_AT
ccgggatccattcaagacaccacaggaaaaggattgaattcaatgcgttggatgagcgaa
gaatcatcgagaactatcaactggaggtcgcctcggaaattcgcacgcaccgcccgnnnn
ngagccgctcgattgctccggttccgttcaacattgatattctcgannnnnnnnnnnnnn
nnnnnnnnntctcgtagagtcggatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnttcaccaccgccgcccaatcatttgctccggtattttattgatttt

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCGGGATCCATTCAAGACACCACAG 672 261 13 Antisense
GATCCATTCAAGACACCACAGGAAA 632 415 17 Antisense
GACACCACAGGAAAAGGATTGAATT 642 367 28 Antisense
GAATTCAATGCGTTGGATGAGCGAA 203 323 48 Antisense
GAAGAATCATCGAGAACTATCAACT 634 339 70 Antisense
GAACTATCAACTGGAGGTCGCCTCG 317 347 83 Antisense
CTGGAGGTCGCCTCGGAAATTCGCA 155 11 93 Antisense
TGCTCCGGTTCCGTTCAACATTGAT 436 581 146 Antisense
GTTCCGTTCAACATTGATATTCTCG 418 441 153 Antisense
CCCAATCATTTGCTCCGGTATTTTA 366 255 279 Antisense
TTTGCTCCGGTATTTTATTGATTTT 646 667 287 Antisense
Sequence Source Affymetrix Proprietary Database