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[171873_x_at]

Description CEK007EYR_rc /REP_DB=TREMBL Accession /GB=D27429 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk7e11 : 3prime end, single read.
Cluster 6grp_total > 46      4grp_total > 30      6grp_cgc > 26      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 41
(3)
A 		3.9
(-3)
A 		8
(-2.3)
A 		27.1
(0.8)
A 		37
B 54.2
(3)
A 		33.2
(0.5)
A 		26.2
(-0.3)
A 		4
(-3)
A 		50
C 57.3
(0.6)
A 		49.3
(-0.2)
A 		24.2
(-3)
A 		78.9
(3)
A 		55
avr 50.8
(3) 		28.8
(-1.2) 		19.5
(-3) 		36.7
(0.3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 52.7
(3)
A 		35.3
(0.6)
A 		15.9
(-2)
A 		21.3
(-1.3)
A 		44.4
(1.9)
A 		8.8
(-3)
A 		44
B 37.1
(0.1)
A 		53.8
(1.9)
A 		35.1
(-0.1)
A 		27.9
(-0.8)
A 		7.5
(-3)
A 		64
(3)
A 		57
C 20.9
(-0.9)
A 		44.7
(1.8)
A 		2.1
(-3)
A 		46.2
(1.9)
A 		4.5
(-2.7)
A 		55.9
(3)
A 		54
avr 36.9
(1.3) 		44.6
(3) 		17.7
(-3) 		31.8
(0.1) 		18.8
(-2.8) 		42.9
(2.6) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 14.9
(3)
A 		0.8
(-3)
A 		2.1
(-2.4)
A 		4
(-1.6)
A 		14
B 17.3
(3)
A 		8.2
(-0.3)
A 		6.1
(-1.1)
A 		0.9
(-3)
A 		16
C 19
(3)
A 		14.2
(0.3)
A 		8.4
(-3)
A 		13.3
(-0.2)
A 		11
avr 17.1
(3) 		7.7
(-1.9) 		5.5
(-3) 		6.1
(-2.7) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 9.7
(1)
A 		12.6
(2.6)
A 		3.5
(-2.3)
A 		5.4
(-1.2)
A 		13.4
(3)
A 		2.1
(-3)
A 		11
B 12.9
(-0.2)
A 		17.9
(1.3)
A 		8.5
(-1.4)
A 		7.4
(-1.8)
A 		3.1
(-3)
A 		23.9
(3)
A 		21
C 7.7
(-0.6)
A 		13.6
(1.3)
A 		0.5
(-3)
A 		9.3
(-0.1)
A 		1.5
(-2.7)
A 		18.7
(3)
A 		18
avr 10.1
(0.3) 		14.7
(2.9) 		4.2
(-3) 		7.4
(-1.2) 		6
(-2) 		14.9
(3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171873_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28038
Sequence Type Exemplar sequence
Representative Public ID CEK007EYR NCBI
Target Description CEK007EYR_rc /REP_DB=TREMBL Accession /GB=D27429 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk7e11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066512
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
B0523.5 ENSEMBL cdna:known chromosome:CEL140:III:8675225:8683977:-1 gene:B0523.5 A 
NM_066512 NCBI Caenorhabditis elegans FLI-I (Drosophila flightless) homolog family member (fli-1) (fli-1) mRNA, complete cds. A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8675351-8675745(-) 87.75 87.75
Public Domain and Genome References
Gene Title
Gene Symbol fli-1
Ensembl B0523.5
Entrez Gene 176215 Entrez gene
SwissProt P34268 EMBL-EBI
WormBase CE36522 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1640391_AT flightless I dm
DROSGENOME1:143161_AT flightless I dm
CHICKEN:GGAAFFX.11777.1.S1_AT flightless I homolog (Drosophila) gga
CHICKEN:GGAAFFX.3112.1.S1_S_AT flightless I homolog (Drosophila) gga
HG-U133_PLUS_2:212024_X_AT flightless I homolog (Drosophila) hs
HG-U133A:212024_X_AT flightless I homolog (Drosophila) hs
HG-U133A_2:212024_X_AT flightless I homolog (Drosophila) hs
HG-U133_PLUS_2:212025_S_AT flightless I homolog (Drosophila) hs
HG-U133A_2:212025_S_AT flightless I homolog (Drosophila) hs
HG-U133A:212025_S_AT flightless I homolog (Drosophila) hs
HUGENEFL:U80184_RNA1_AT flightless I homolog (Drosophila) hs
U133_X3P:HS.83849.2.S2_3P_A_AT flightless I homolog (Drosophila) hs
U133_X3P:HS.83849.2.S1_3P_A_AT flightless I homolog (Drosophila) hs
U133_X3P:HS.83849.1.A1_3P_A_AT flightless I homolog (Drosophila) hs
HG-U133A_2:222065_S_AT flightless I homolog (Drosophila) hs
HG-FOCUS:222065_S_AT flightless I homolog (Drosophila) hs
HG-U133_PLUS_2:222065_S_AT flightless I homolog (Drosophila) hs
HG-U133A:222065_S_AT flightless I homolog (Drosophila) hs
HG-U133_PLUS_2:227302_S_AT flightless I homolog (Drosophila) hs
HG-U133B:227302_S_AT flightless I homolog (Drosophila) hs
HG-U95AV2:33133_AT flightless I homolog (Drosophila) hs
HG-U95E:88279_S_AT flightless I homolog (Drosophila) hs
HG-U95E:88281_S_AT flightless I homolog (Drosophila) hs
MU11KSUBA:C79694_RC_S_AT flightless I homolog (Drosophila) mm
MU11KSUBA:AA038461_AT flightless I homolog (Drosophila) mm
MU11KSUBA:AA038461_G_AT flightless I homolog (Drosophila) mm
MG-U74AV2:95489_AT flightless I homolog (Drosophila) mm
MG-U74AV2:97593_F_AT flightless I homolog (Drosophila) mm
MG-U74AV2:97594_R_AT flightless I homolog (Drosophila) mm
MOE430A:1439356_AT flightless I homolog (Drosophila) mm
MOUSE430A_2:1439356_AT flightless I homolog (Drosophila) mm
MOUSE430_2:1439356_AT flightless I homolog (Drosophila) mm
MOE430A:1416044_AT flightless I homolog (Drosophila) mm
MOUSE430A_2:1416044_AT flightless I homolog (Drosophila) mm
MOUSE430_2:1416044_AT flightless I homolog (Drosophila) mm
MOE430A:1448189_A_AT flightless I homolog (Drosophila) mm
MOUSE430A_2:1448189_A_AT flightless I homolog (Drosophila) mm
MOUSE430_2:1448189_A_AT flightless I homolog (Drosophila) mm
MU19KSUBC:TC40240_AT Flightless I homolog (Drosophila), mRNA (cDNA clone IMAGE:4161799) mm
MU19KSUBC:TC41738_AT Flightless I homolog (Drosophila), mRNA (cDNA clone IMAGE:4161799) mm
RG-U34B:RC_AA850662_AT flightless I homolog (Drosophila) (predicted) rn
RAE230A:1372113_AT flightless I homolog (Drosophila) (predicted) rn
RAT230_2:1372113_AT flightless I homolog (Drosophila) (predicted) rn
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3779 actin binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB37088 Fli-i (drosophila flightless) homolog protein 1 [Caenorhabditis elegans] ref|NP_498913.2| FLI-I (Drosophila flightless) homolog family member (fli-1) [Caenorhabditis elegans] sp|P34268|FLII_CAEEL Flightless-I protein homolog gb|AAC03567.1| flightless-I homolog [Caenorhabditis elegans] 0.0
blast CAE57608 Hypothetical protein CBG00589 [Caenorhabditis briggsae] 0.0
blast S44732 b0523.5 protein - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.016
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.051
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.036
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.013
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.38
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.072
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.057
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 8.8E-5
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.23
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.011
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.011
Pfam IPR007123 EMBL-EBI Gelsolin region 1.5E-18
Pfam IPR007123 EMBL-EBI Gelsolin region 3.9E-19
Pfam IPR007123 EMBL-EBI Gelsolin region 1.2E-19
Pfam IPR007123 EMBL-EBI Gelsolin region 3.4E-16
Sequence
Target Sequence 
>C. ELEGANS:171873_X_AT
tgtgacaatatgatttccccgccatcccttattctacacaagtgtccctgattagacgag
tataggaacatttgttttcttccattgattttatagggtcgtaannnnncaattntcata
tcttcttcgagactcgttctcaatctttgagccttcttcacttgtcaaataatttncctn
anttactnnnnnttaagtaggttgaaatccctcagatgttccttgttctttctccatgca
tattgcttgagaatactgactggttctctcctat

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTGACAATATGATTTCCCCGCCAT 677 553 109 Antisense
GCCATCCCTTATTCTACACAAGTGT 430 281 129 Antisense
CACAAGTGTCCCTGATTAGACGAGT 118 195 145 Antisense
AACATTTGTTTTCTTCCATTGATTT 225 137 175 Antisense
TCATATCTTCTTCGAGACTCGTTCT 537 619 224 Antisense
CGAGACTCGTTCTCAATCTTTGAGC 688 249 236 Antisense
CTCAATCTTTGAGCCTTCTTCACTT 512 227 247 Antisense
GAGCCTTCTTCACTTGTCAAATAAT 617 383 257 Antisense
TGAAATCCCTCAGATGTTCCTTGTT 566 571 311 Antisense
TGTTCTTTCTCCATGCATATTGCTT 156 563 332 Antisense
AGAATACTGACTGGTTCTCTCCTAT 703 75 358 Antisense
Sequence Source Affymetrix Proprietary Database