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[171872_s_at]

Description CEK095F5R_rc /REP_DB=TREMBL Accession /GB=D66342 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk95f5 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 76      6grp_high1_10_10 > 66      4grp_highest_8_8 > 47      4grp_high_8_8 > 11      6grp_highest_nonorm > 82      6grp_total > 67      4grp_total > 21      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 280
1 2 3 4 range
A 356.3
(-0.9)
P 		398.4
(0.3)
P 		281.3
(-3)
P 		491.5
(3)
P 		210
B 454
(-0)
P 		389.9
(-1.8)
P 		348.3
(-3)
P 		561.4
(3)
P 		213
C 479.1
(3)
P 		320.4
(-3)
P 		351.8
(-1.8)
P 		421.2
(0.8)
P 		159
avr 429.8
(0.8) 		369.6
(-1.4) 		327.1
(-3) 		491.4
(3) 		164

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 449
1 2 3 4 5 6 range
A 314.8
(-0.3)
P 		303.5
(-0.7)
P 		413.2
(3)
P 		286.3
(-1.2)
P 		234
(-3)
P 		392.2
(2.3)
P 		179
B 419.2
(-0.5)
P 		307.2
(-3)
P 		442.5
(0)
P 		313
(-2.9)
P 		351.2
(-2)
P 		574.8
(3)
P 		268
C 290
(-2.6)
P 		294.7
(-2.5)
P 		263
(-3)
P 		289.1
(-2.6)
P 		318.2
(-2.2)
P 		683.3
(3)
P 		420
avr 341.3
(-1.9) 		301.8
(-2.9) 		372.9
(-1.2) 		296.1
(-3) 		301.1
(-2.9) 		550.1
(3) 		254
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 88
1 2 3 4 range
A 129.7
(3)
P 		86.5
(-1.5)
P 		73.5
(-2.8)
P 		71.9
(-3)
P 		58
B 144.8
(3)
P 		96.3
(-1.5)
P 		80.7
(-3)
P 		119.6
(0.6)
P 		64
C 158.6
(3)
P 		92.1
(-1.6)
P 		122.6
(0.5)
P 		71
(-3)
P 		88
avr 144.4
(3) 		91.6
(-2.6) 		92.3
(-2.5) 		87.5
(-3) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 171
1 2 3 4 5 6 range
A 58
(-3)
P 		107.9
(3)
P 		90
(0.8)
P 		72.6
(-1.2)
P 		70.6
(-1.5)
P 		95.5
(1.5)
P 		50
B 145.9
(-0.1)
P 		102.2
(-2.1)
P 		107.5
(-1.9)
P 		82.9
(-3)
P 		142.7
(-0.3)
P 		214.3
(3)
P 		131
C 107.5
(-1.3)
P 		89.9
(-1.9)
P 		66.9
(-2.7)
P 		58.1
(-3)
P 		103
(-1.4)
P 		228.7
(3)
P 		171
avr 103.8
(-1.2) 		100
(-1.4) 		88.1
(-2.1) 		71.2
(-3) 		105.4
(-1.1) 		179.5
(3) 		108
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171872_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27954
Sequence Type Exemplar sequence
Representative Public ID CEK095F5R NCBI
Target Description CEK095F5R_rc /REP_DB=TREMBL Accession /GB=D66342 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk95f5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067093(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067093 NCBI Caenorhabditis elegans Y66D12A.8 (Y66D12A.8) mRNA, complete cds. 11/11 None
SNAP00000020817 ENSEMBL cdna:SNAP chromosome:CEL140:III:11568017:11592621:1 10/11 None
GENEFINDER00000020832 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:11576426:11578526:1 11/11 None
Y66D12A.8 ENSEMBL cdna:known chromosome:CEL140:III:11574098:11578596:1 gene:Y66D12A.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:11576743-11578563(+) 79.82 79.82
Public Domain and Genome References
Gene Title
Ensembl Y66D12A.8
Entrez Gene 176589 Entrez gene
SwissProt Q95Q06 EMBL-EBI
WormBase CE28806 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1589835_S_AT similar to CG16865-PA cfa
CANINE_2:CFA.9217.1.A1_AT similar to CG16865-PA cfa
CANINE_2:CFAAFFX.28149.1.S1_AT similar to CG16865-PA cfa
DROSOPHILA_2:1629159_AT dm
DROSGENOME1:144309_AT dm
HG-U133_PLUS_2:219805_AT hypothetical protein FLJ22965 hs
HG-U133A:219805_AT hypothetical protein FLJ22965 hs
HG-U133A_2:219805_AT hypothetical protein FLJ22965 hs
U133_X3P:G11545812_3P_AT hypothetical protein FLJ22965 hs
U133_X3P:HS.273627.0.A1_3P_AT hypothetical protein FLJ22965 hs
U133_X3P:HS.224043.0.A1_3P_AT hypothetical protein FLJ22965 hs
HG-U133_PLUS_2:235442_AT hypothetical protein FLJ22965 hs
HG-U133B:235442_AT hypothetical protein FLJ22965 hs
HG-U133_PLUS_2:239444_AT hypothetical protein FLJ22965 hs
HG-U133B:239444_AT hypothetical protein FLJ22965 hs
MOUSE430_2:1454174_A_AT RIKEN cDNA C330007P06 gene mm
MOE430A:1454174_A_AT RIKEN cDNA C330007P06 gene mm
MOUSE430A_2:1454174_A_AT RIKEN cDNA C330007P06 gene mm
MU11KSUBA:C79507_RC_F_AT RIKEN cDNA C330007P06 gene mm
MG-U74BV2:114686_AT RIKEN cDNA C330007P06 gene mm
MOE430A:1451202_AT RIKEN cDNA C330007P06 gene mm
MOUSE430A_2:1451202_AT RIKEN cDNA C330007P06 gene mm
MOUSE430_2:1451202_AT RIKEN cDNA C330007P06 gene mm
MU11KSUBA:D18428_RC_AT RIKEN cDNA C330007P06 gene, mRNA (cDNA clone MGC:38347 IMAGE:5344198) mm
MU19KSUBA:TC17793_AT RIKEN cDNA C330007P06 gene, mRNA (cDNA clone MGC:38347 IMAGE:5344198) mm
MU19KSUBB:TC33700_AT RIKEN cDNA C330007P06 gene, mRNA (cDNA clone MGC:38347 IMAGE:5344198) mm
RAE230B:1380185_AT Similar to hypothetical protein FLJ22965 rn
RAT230_2:1380185_AT Similar to hypothetical protein FLJ22965 rn
RAE230B:1394891_AT Similar to hypothetical protein FLJ22965 rn
RAT230_2:1394891_AT Similar to hypothetical protein FLJ22965 rn
RG-U34B:RC_AI045223_AT Similar to hypothetical protein FLJ22965 rn
Protein Similarities
Method ID Description E-Value
blast CAC70129 Hypothetical protein Y66D12A.5 [Caenorhabditis elegans] ref|NP_499497.2| Y66D12A.5 [Caenorhabditis elegans] 0.0
blast CAC70131 Hypothetical protein Y66D12A.8 [Caenorhabditis elegans] ref|NP_499494.1| Y66D12A.8 [Caenorhabditis elegans] 1.0E-117
blast CAC70141 Hypothetical protein Y66D12A.9 [Caenorhabditis elegans] ref|NP_499493.1| Y66D12A.9 [Caenorhabditis elegans] 1.0E-116
blast CAC70131 Hypothetical protein Y66D12A.8 [Caenorhabditis elegans] ref|NP_499494.1| Y66D12A.8 [Caenorhabditis elegans] 1.0E-111
blast CAE67691 Hypothetical protein CBG13259 [Caenorhabditis briggsae] 1.0E-101
blast CAC70131 Hypothetical protein Y66D12A.8 [Caenorhabditis elegans] ref|NP_499494.1| Y66D12A.8 [Caenorhabditis elegans] 2.0E-63
blast CAE67691 Hypothetical protein CBG13259 [Caenorhabditis briggsae] 3.0E-56
blast XP_396097 PREDICTED: similar to Zgc:103697 [Apis mellifera] 7.0E-28
Protein Domains
Database ID Description E-Value
Pfam IPR003186 EMBL-EBI Proteasome activator pa28, beta subunit 5.4E-63
Pfam IPR003185 EMBL-EBI Proteasome activator pa28, alpha subunit 1.7E-10
Sequence
Target Sequence 
>C. ELEGANS:171872_S_AT
aaaatgggaagtgtgacagtttcgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncg
agagaaaccgccgaatcatacacaatgaacgcgagaaattgttcacgacgcactgaagcg
caagggaatcggctctggaaagtttgcagttccacagannnnnnnnnnnnnnnnnnnnnn
nnnggctgctcctnctggatcagaaactaccgagtgtgaagaggaagcgtggaac

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAATGGGAAGTGTGACAGTTTCGA 70 133 64 Antisense
GAGAGAAACCGCCGAATCATACACA 541 395 123 Antisense
GAAACCGCCGAATCATACACAATGA 22 359 127 Antisense
GCCGAATCATACACAATGAACGCGA 197 285 133 Antisense
AATTGTTCACGACGCACTGAAGCGC 370 179 160 Antisense
TTCACGACGCACTGAAGCGCAAGGG 363 685 165 Antisense
GAAGCGCAAGGGAATCGGCTCTGGA 709 343 178 Antisense
GCGCAAGGGAATCGGCTCTGGAAAG 241 289 181 Antisense
GGGAATCGGCTCTGGAAAGTTTGCA 425 489 187 Antisense
AATCGGCTCTGGAAAGTTTGCAGTT 14 169 190 Antisense
CGAGTGTGAAGAGGAAGCGTGGAAC 692 249 274 Antisense
Sequence Source Affymetrix Proprietary Database