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[171869_at]

Description CEK014CXR_rc /REP_DB=TREMBL Accession /GB=D27342 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk14c10 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 26      4grp_high_8_8 > 32      6grp_total > 26      4grp_total > 54      6grp_high1_sub > De      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 116
1 2 3 4 range
A 186.2
(3)
A 		135.2
(-0.2)
P 		142.6
(0.2)
M 		92
(-3)
A 		94
B 208.3
(3)
P 		132.3
(-2.7)
M 		156.4
(-0.9)
P 		127.7
(-3)
P 		81
C 179.6
(3)
A 		171.9
(2.1)
A 		129.1
(-3)
M 		168.9
(1.7)
P 		51
avr 191.4
(3) 		146.5
(-1.4) 		142.7
(-1.7) 		129.5
(-3) 		62

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 156
1 2 3 4 5 6 range
A 212.2
(3)
P 		165.6
(-0)
P 		203.6
(2.4)
M 		119.3
(-3)
P 		178.7
(0.8)
A 		153
(-0.8)
A 		93
B 226.5
(3)
P 		199.6
(1.7)
P 		182.8
(0.9)
P 		195.3
(1.5)
A 		102.1
(-3)
M 		155.5
(-0.4)
P 		124
C 172
(1.6)
P 		202.6
(3)
P 		70.7
(-3)
P 		116.5
(-0.9)
P 		124.3
(-0.6)
P 		147.2
(0.5)
P 		132
avr 203.6
(3) 		189.3
(1.7) 		152.4
(-1.5) 		143.7
(-2.2) 		135
(-3) 		151.9
(-1.5) 		69
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 67.8
(3)
A 		29.3
(-1.3)
P 		37.3
(-0.4)
M 		13.5
(-3)
A 		54
B 66.4
(3)
P 		32.7
(-2.2)
M 		36.2
(-1.6)
P 		27.2
(-3)
P 		39
C 59.5
(3)
A 		49.4
(1)
A 		45
(0.2)
M 		28.5
(-3)
P 		31
avr 64.6
(3) 		37.1
(-1) 		39.5
(-0.6) 		23.1
(-3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 39.1
(-1.2)
P 		58.9
(3)
P 		44.3
(-0.1)
M 		30.3
(-3)
P 		53.9
(2)
A 		37.3
(-1.5)
A 		29
B 78.8
(3)
P 		66.4
(1)
P 		44.4
(-2.5)
P 		51.7
(-1.4)
A 		41.5
(-3)
M 		58
(-0.3)
P 		37
C 63.7
(3)
P 		61.8
(2.8)
P 		18
(-3)
P 		23.4
(-2.3)
P 		40.2
(-0.1)
P 		49.3
(1.1)
P 		46
avr 60.5
(2.6) 		62.4
(3) 		35.6
(-2.9) 		35.1
(-3) 		45.2
(-0.8) 		48.2
(-0.1) 		27
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 171869_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27719
Sequence Type Exemplar sequence
Representative Public ID CEK014CXR NCBI
Target Description CEK014CXR_rc /REP_DB=TREMBL Accession /GB=D27342 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk14c10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029735, NM_076703
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
T14E8.1a ENSEMBL cdna:known chromosome:CEL140:X:6553243:6559441:1 gene:T14E8.1 A 
NM_076703 NCBI Caenorhabditis elegans T14E8.1a (T14E8.1) mRNA, complete cds. None
T14E8.1b.1 ENSEMBL cdna:known chromosome:CEL140:X:6553271:6559409:1 gene:T14E8.1 A 
T14E8.1c ENSEMBL cdna:known chromosome:CEL140:X:6553271:6559368:1 gene:T14E8.1 A 
NM_001029735 NCBI Caenorhabditis elegans T14E8.1c (T14E8.1) mRNA, complete cds. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6559171-6559349(+) 81.86 81.86
Public Domain and Genome References
Ensembl T14E8.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA82385 Hypothetical protein T14E8.1a [Caenorhabditis elegans] ref|NP_509104.1| T14E8.1a [Caenorhabditis elegans] 0.0
blast AAT92061 Hypothetical protein T14E8.1c [Caenorhabditis elegans] ref|NP_001024906.1| T14E8.1c [Caenorhabditis elegans] 0.0
blast AAL06055 Hypothetical protein T14E8.1b [Caenorhabditis elegans] ref|NP_509105.1| T14E8.1b [Caenorhabditis elegans] 0.0
Protein Families
Method ID Description E-Value
hanks 3.1.7 CMCG Group; CMGC I Cyclin-dependent (CDKs) and close relatives; PCTAIRE1 1.0E-19
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 3.3E-71
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509104.1 1 650-672
NP_001024906.1 1 650-672
T14E8.1a 1 650-672
T14E8.1b.1 1 650-672
T14E8.1c 1 650-672
Sequence
Target Sequence 
>C. ELEGANS:171869_AT
cgattctgtcccgagttactggtactttctttgtgatttgtatccttatggatacttcnn
nnngcatttgtatnttccatcttccctcatattgcccctgcggttcgtatttgaccattt
gtttccgggcttgatacac

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGATTCTGTCCCGAGTTACTGGTAC 346 243 48 Antisense
TCTGTCCCGAGTTACTGGTACTTTC 649 607 52 Antisense
TCCCGAGTTACTGGTACTTTCTTTG 598 595 56 Antisense
GTTACTGGTACTTTCTTTGTGATTT 239 447 62 Antisense
GGTACTTTCTTTGTGATTTGTATCC 278 505 68 Antisense
CTTTGTGATTTGTATCCTTATGGAT 413 223 76 Antisense
CCCTGCGGTTCGTATTTGACCATTT 198 259 143 Antisense
GTTCGTATTTGACCATTTGTTTCCG 629 441 150 Antisense
GTATTTGACCATTTGTTTCCGGGCT 699 451 154 Antisense
TGACCATTTGTTTCCGGGCTTGATA 206 569 159 Antisense
CCATTTGTTTCCGGGCTTGATACAC 626 267 162 Antisense
Sequence Source Affymetrix Proprietary Database