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[171868_x_at]

Description CEK133H4R_rc /REP_DB=TREMBL Accession /GB=D65272 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk133h4 : 3prime end, single read.
Cluster 6grp_total > 05      4grp_total > 51      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 112
1 2 3 4 range
A 126.8
(-0.3)
P 		175.2
(3)
P 		153
(1.5)
P 		86.1
(-3)
A 		89
B 129
(1)
P 		160.5
(3)
P 		156.3
(2.7)
P 		67.2
(-3)
A 		93
C 116.1
(-0.7)
P 		179
(3)
P 		139.6
(0.7)
P 		75.9
(-3)
A 		103
avr 124
(0) 		171.6
(3) 		149.6
(1.6) 		76.4
(-3) 		95

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 118
1 2 3 4 5 6 range
A 101.8
(-0.6)
A 		135.3
(1.8)
A 		79.3
(-2.3)
P 		69.2
(-3)
P 		151.5
(3)
M 		80
(-2.2)
A 		82
B 120.2
(-0.7)
P 		186.7
(3)
P 		165.7
(1.8)
P 		85.2
(-2.7)
P 		79.6
(-3)
P 		83.7
(-2.8)
A 		107
C 184.7
(3)
P 		72.9
(-3)
P 		118.7
(-0.5)
A 		86
(-2.3)
A 		132.9
(0.2)
P 		76
(-2.8)
M 		112
avr 135.6
(3) 		131.6
(2.6) 		121.2
(1.4) 		80.1
(-3) 		121.3
(1.5) 		79.9
(-3) 		56
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 46.2
(3)
P 		38
(1.5)
P 		40
(1.9)
P 		12.6
(-3)
A 		34
B 41.1
(3)
P 		39.7
(2.7)
P 		36.2
(1.9)
P 		14.3
(-3)
A 		27
C 38.4
(1)
P 		51.5
(3)
P 		48.7
(2.6)
P 		12.8
(-3)
A 		39
avr 41.9
(2.8) 		43.1
(3) 		41.6
(2.7) 		13.2
(-3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 18.8
(-2.7)
A 		48.1
(3)
A 		17.3
(-3)
P 		17.6
(-2.9)
P 		45.7
(2.5)
M 		19.5
(-2.6)
A 		31
B 41.8
(-0.1)
P 		62.1
(3)
P 		40.2
(-0.3)
P 		22.6
(-3)
P 		32.4
(-1.5)
P 		31.2
(-1.7)
A 		40
C 68.5
(3)
P 		22.3
(-2.4)
P 		30.2
(-1.5)
A 		17.3
(-3)
A 		43
(0)
P 		25.4
(-2.1)
M 		51
avr 43
(2.7) 		44.2
(3) 		29.2
(-0.6) 		19.2
(-3) 		40.4
(2.1) 		25.4
(-1.5) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171868_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27709
Sequence Type Exemplar sequence
Representative Public ID CEK133H4R NCBI
Target Description CEK133H4R_rc /REP_DB=TREMBL Accession /GB=D65272 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk133h4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026647
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y71G12B.11b ENSEMBL cdna:known chromosome:CEL140:I:1721598:1733029:1 gene:Y71G12B.11 A 
NM_001026647 NCBI Caenorhabditis elegans Y71G12B.11b (Y71G12B.11) mRNA, complete cds. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:1732790-1733000(+) 61.32 64.47
Public Domain and Genome References
Ensembl Y71G12B.11
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK73910 Hypothetical protein Y71G12B.11b [Caenorhabditis elegans] ref|NP_001021818.1| Y71G12B.11b [Caenorhabditis elegans] 0.0
blast AAK73909 Hypothetical protein Y71G12B.11a [Caenorhabditis elegans] ref|NP_490886.2| Y71G12B.11a [Caenorhabditis elegans] gb|AAA74747.1| talin 0.0
blast CAE74421 Hypothetical protein CBG22153 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000299 EMBL-EBI Band 4.1 9.1E-36
Sequence
Target Sequence 
>C. ELEGANS:171868_X_AT
gccacacagaccgcttatgatgcaacacagtcgatatcgacgttccgattcaccaaagaa
gaagcagcaagagcacgagcgcgccgagtccactgaacagcttctagtacgatgattcgc
acgcgattttacgcattcgttaaatttgnnnnnnnnnnnnnnnnnnnnnnnnnnngcccc
ggttttctagaatcttctagaaaacattcaaaatttcatatcttcttgcccttt

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCACACAGACCGCTTATGATGCAA 17 279 64 Antisense
CAGACCGCTTATGATGCAACACAGT 527 205 70 Antisense
GCAACACAGTCGATATCGACGTTCC 167 319 85 Antisense
GTCGATATCGACGTTCCGATTCACC 175 473 93 Antisense
TCGACGTTCCGATTCACCAAAGAAG 645 601 100 Antisense
AGAAGCAGCAAGAGCACGAGCGCGC 586 73 123 Antisense
GAGTCCACTGAACAGCTTCTAGTAC 240 399 149 Antisense
TCTAGTACGATGATTCGCACGCGAT 690 613 166 Antisense
CGCACGCGATTTTACGCATTCGTTA 575 253 181 Antisense
GCCCCGGTTTTCTAGAATCTTCTAG 680 283 239 Antisense
AAAATTTCATATCTTCTTGCCCTTT 606 133 273 Antisense
Sequence Source Affymetrix Proprietary Database