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[171867_x_at] major sperm protein MSP-19;MSP-57;MSP-53;MSP-65;MSP-59;MSP-113;MSP-51

Description CEC2033_rc /REP_DB=TREMBL Accession /GB=C10203 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk122h4 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 89      6grp_high1_10_10 > 98      4grp_high_8_8 > 06      6grp_highest_nonorm > 49      6grp_total > 99      4grp_total > 01      6grp_highest_sub > In      6grp_cgc > 79      6grp_high1_sub > In      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 849
1 2 3 4 range
A 80.4
(-3)
P 		91.5
(-2.9)
P 		210.1
(-2.1)
P 		929.4
(3)
P 		849
B 100.1
(-2.6)
P 		86.6
(-3)
A 		154.3
(-1)
P 		294.5
(3)
P 		208
C 164.6
(-2.4)
P 		108.7
(-2.9)
P 		103
(-3)
P 		720.3
(3)
P 		617
avr 115
(-2.8) 		95.6
(-3) 		155.8
(-2.3) 		648.1
(3) 		553

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16569
1 2 3 4 5 6 range
A 119.1
(-3)
P 		89.5
(-3)
P 		173.1
(-3)
P 		1429
(-2.5)
P 		9926.1
(0.6)
P 		16640.1
(3)
P 		16551
B 91.9
(-3)
P 		103.9
(-3)
P 		126.2
(-3)
P 		895.7
(-2.6)
P 		10068.6
(2.5)
P 		11044.1
(3)
P 		10952
C 71.2
(-3)
P 		182.8
(-3)
P 		112.3
(-3)
P 		865.1
(-2.7)
P 		13753.3
(3)
P 		11164.6
(1.9)
P 		13682
avr 94.1
(-3) 		125.4
(-3) 		137.2
(-3) 		1063.3
(-2.5) 		11249.3
(2.2) 		12949.6
(3) 		12856
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 116
1 2 3 4 range
A 29.3
(-2.5)
P 		19.9
(-3)
P 		54.9
(-1.2)
P 		136
(3)
P 		116
B 31.9
(-1.5)
P 		21.4
(-3)
A 		35.8
(-0.9)
P 		62.7
(3)
P 		41
C 54.5
(-1.5)
P 		31.3
(-3)
P 		35.9
(-2.7)
P 		121.4
(3)
P 		90
avr 38.6
(-2) 		24.2
(-3) 		42.2
(-1.7) 		106.7
(3) 		83

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4428
1 2 3 4 5 6 range
A 22
(-3)
P 		31.8
(-3)
P 		37.7
(-3)
P 		362.4
(-2.5)
P 		2995.3
(1.4)
P 		4051.3
(3)
P 		4029
B 32
(-3)
P 		34.6
(-3)
P 		30.6
(-3)
P 		237.2
(-2.7)
P 		4090.7
(3)
P 		4118.3
(3)
P 		4088
C 26.4
(-3)
P 		55.8
(-3)
P 		28.6
(-3)
P 		174
(-2.8)
P 		4450.4
(3)
P 		3737.4
(2)
P 		4424
avr 26.8
(-3) 		40.7
(-3) 		32.3
(-3) 		257.9
(-2.6) 		3845.5
(2.8) 		3969
(3) 		3942
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171867_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28058
Sequence Type Exemplar sequence
Representative Public ID CEC2033 NCBI
Target Description CEC2033_rc /REP_DB=TREMBL Accession /GB=C10203 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk122h4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068313, NM_062571, NM_062500, NM_068379, NM_069063, NM_069339, NM_068370, NM_062548, NM_068354, NM_069358, NM_068312, NM_068377, NM_068372, NM_068359, NM_068351, NM_068310, NM_069380
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000006015 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5316512:5316895:1 None
K07F5.2 ENSEMBL cdna:known chromosome:CEL140:IV:9837623:9838006:1 gene:K07F5.2 A 
ZK354.1 ENSEMBL cdna:known chromosome:CEL140:IV:5316512:5316895:1 gene:ZK354.1 A 
SNAP00000034129 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5241391:5241783:-1 None
SNAP00000016470 ENSEMBL cdna:SNAP chromosome:CEL140:II:4825401:4825784:1 None
NM_069380 NCBI Caenorhabditis elegans Major Sperm Protein family member (msp-77) (msp-77) mRNA, complete cds. A 
R13H9.2 ENSEMBL cdna:known chromosome:CEL140:IV:5062568:5062951:1 gene:R13H9.2 A 
GENEFINDER00000043489 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9770020:9770403:1 None
NM_068310 NCBI Caenorhabditis elegans Major Sperm Protein family member (msp-55) (msp-55) mRNA, complete cds. A 
GENEFINDER00000007236 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5055621:5056004:-1 None
GENEFINDER00000023395 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9688992:9689375:1 None
SNAP00000006011 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5308582:5308815:1 None
Y59E9AR.1 ENSEMBL cdna:known chromosome:CEL140:IV:5249417:5249809:1 gene:Y59E9AR.1 A 
SNAP00000009139 ENSEMBL cdna:SNAP chromosome:CEL140:II:5115084:5115317:-1 None
T13F2.11 ENSEMBL cdna:known chromosome:CEL140:IV:9770020:9770403:1 gene:T13F2.11 A 
F59A6.8 ENSEMBL cdna:pseudogene chromosome:CEL140:II:5012858:5013259:-1 gene:F59A6.8 None
GENEFINDER00000029416 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5064668:5065051:-1 None
C34F11.4 ENSEMBL cdna:known chromosome:CEL140:II:5199767:5200160:1 gene:C34F11.4 A 
GENEFINDER00000004265 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9837623:9838006:1 None
GENEFINDER00000002656 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5265677:5265910:1 None
SNAP00000040134 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10095405:10095788:1 None
SNAP00000019952 ENSEMBL cdna:SNAP chromosome:CEL140:II:5158622:5158855:-1 None
GENEFINDER00000021348 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5194346:5194729:1 None
K08F4.8 ENSEMBL cdna:known chromosome:CEL140:IV:10143328:10143711:-1 gene:K08F4.8 A 
SNAP00000043876 ENSEMBL cdna:SNAP chromosome:CEL140:II:4916165:4916548:-1 None
NM_068351 NCBI Caenorhabditis elegans Y59E9AR.7 (Y59E9AR.7) mRNA, complete cds. A 
R05F9.8 ENSEMBL cdna:known chromosome:CEL140:II:4892087:4892680:-1 gene:R05F9.8 A 
NM_068359 NCBI Caenorhabditis elegans Major Sperm Protein family member (msp-19) (msp-19) mRNA, complete cds. A 
GENEFINDER00000000821 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4785885:4786268:-1 None
SNAP00000004244 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9837623:9838006:1 None
SNAP00000006004 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5294946:5295329:-1 None
SNAP00000005865 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10143994:10144146:1 None
ZK354.4 ENSEMBL cdna:known chromosome:CEL140:IV:5297951:5298334:1 gene:ZK354.4 A 
K07F5.3 ENSEMBL cdna:known chromosome:CEL140:IV:9841513:9841896:1 gene:K07F5.3 A 
GENEFINDER00000006024 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5316512:5316895:1 None
GENEFINDER00000006018 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5308582:5308815:1 None
SNAP00000029847 ENSEMBL cdna:SNAP chromosome:CEL140:IV:8571420:8571803:1 None
NM_068372 NCBI Caenorhabditis elegans Major Sperm Protein family member (msp-113) (msp-113) mRNA, complete cds. A 
SNAP00000043472 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9766745:9767128:-1 None
GENEFINDER00000016484 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4825401:4825784:1 None
GENEFINDER00000034961 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4933012:4933395:1 None
R13H9.4 ENSEMBL cdna:known chromosome:CEL140:IV:5064668:5065051:-1 gene:R13H9.4 A 
GENEFINDER00000019959 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5158622:5158949:-1 None
SNAP00000041533 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9894603:9894986:1 None
SNAP00000029404 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5062568:5062951:1 None
ZK1251.6 ENSEMBL cdna:known chromosome:CEL140:IV:9688992:9689375:1 gene:ZK1251.6 A 
GENEFINDER00000041398 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5809912:5810295:-1 None
F36H12.6 ENSEMBL cdna:pseudogene chromosome:CEL140:IV:5265581:5265814:1 gene:F36H12.6 None
ZK546.6 ENSEMBL cdna:known chromosome:CEL140:II:4933000:4933395:1 gene:ZK546.6 A 
NM_068377 NCBI Caenorhabditis elegans Major Sperm Protein family member (msp-59) (msp-59) mRNA, complete cds. A 
SNAP00000034134 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5249417:5249809:1 None
ZK1248.6 ENSEMBL cdna:known chromosome:CEL140:II:5809912:5810295:-1 gene:ZK1248.6 A 
NM_068312 NCBI Caenorhabditis elegans Major Sperm Protein family member (msp-57) (msp-57) mRNA, complete cds. A 
SNAP00000006013 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5312717:5313100:-1 None
ZK354.11 ENSEMBL cdna:known chromosome:CEL140:IV:5312717:5313100:-1 gene:ZK354.11 A 
K07F5.1 ENSEMBL cdna:known chromosome:CEL140:IV:9836008:9836391:-1 gene:K07F5.1 A 
GENEFINDER00000006021 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5312717:5313100:-1 None
C04G2.4 ENSEMBL cdna:known chromosome:CEL140:IV:10095405:10095788:1 gene:C04G2.4 A 
SNAP00000021327 ENSEMBL cdna:SNAP chromosome:CEL140:II:5194346:5194729:1 None
F32B6.6 ENSEMBL cdna:known chromosome:CEL140:IV:9894603:9894986:1 gene:F32B6.6 A 
NM_069358 NCBI Caenorhabditis elegans Major Sperm Protein family member (msp-81) (msp-81) mRNA, complete cds. A 
F09C12.7 ENSEMBL cdna:known chromosome:CEL140:II:5115084:5115317:-1 gene:F09C12.7 A 
F36H12.7 ENSEMBL cdna:known chromosome:CEL140:IV:5260578:5260961:1 gene:F36H12.7 A 
NM_068354 NCBI Caenorhabditis elegans Y59E9AR.1 (Y59E9AR.1) mRNA, complete cds. A 
C09B9.6 ENSEMBL cdna:known chromosome:CEL140:IV:5055621:5056004:-1 gene:C09B9.6 A 
GENEFINDER00000043888 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4892297:4892680:-1 None
GENEFINDER00000043484 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9766745:9767128:-1 None
F26G1.8 ENSEMBL cdna:pseudogene chromosome:CEL140:II:4787146:4787507:1 gene:F26G1.8 None
GENEFINDER00000005869 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10143328:10143711:-1 None
Y59H11AM.1 ENSEMBL cdna:known chromosome:CEL140:IV:8571420:8571803:1 gene:Y59H11AM.1 A 
SNAP00000006006 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5297951:5298334:1 None
SNAP00000002639 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5260578:5260961:1 None
SNAP00000023386 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9688992:9689375:1 None
GENEFINDER00000004273 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9841513:9841896:1 None
T13F2.10 ENSEMBL cdna:known chromosome:CEL140:IV:9766745:9767128:-1 gene:T13F2.10 A 
GENEFINDER00000040145 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10095405:10095788:1 None
GENEFINDER00000029413 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5062568:5062951:1 None
GENEFINDER00000034140 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5241391:5241783:-1 None
R05F9.13 ENSEMBL cdna:known chromosome:CEL140:II:4916165:4916548:-1 gene:R05F9.13 A 
SNAP00000043475 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9770020:9770403:1 None
SNAP00000007231 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5055621:5056004:-1 None
SNAP00000004246 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9841513:9841896:1 None
Y59E9AR.7 ENSEMBL cdna:known chromosome:CEL140:IV:5241391:5241783:-1 gene:Y59E9AR.7 A 
NM_062548 NCBI Caenorhabditis elegans Major Sperm Protein family member (msp-74) (msp-74) mRNA, complete cds. A 
NM_068370 NCBI Caenorhabditis elegans Major Sperm Protein family member (msp-51) (msp-51) mRNA, complete cds. A 
SNAP00000029405 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5064668:5065051:-1 None
ZK354.10 ENSEMBL cdna:pseudogene chromosome:CEL140:IV:5308453:5308814:1 gene:ZK354.10 None
W08D2.9 ENSEMBL cdna:pseudogene chromosome:CEL140:IV:9832462:9832605:-1 gene:W08D2.9 None
GENEFINDER00000006020 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5294990:5295329:-1 None
NM_069339 NCBI Caenorhabditis elegans Major Sperm Protein family member (msp-79) (msp-79) mRNA, complete cds. A 
NM_069063 NCBI Caenorhabditis elegans Y59H11AM.1 (Y59H11AM.1) mRNA, complete cds. A 
GENEFINDER00000004263 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9836008:9836391:-1 None
GENEFINDER00000029849 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8571420:8571803:1 None
C34F11.6 ENSEMBL cdna:known chromosome:CEL140:II:5194346:5194729:1 gene:C34F11.6 A 
NM_068379 NCBI Caenorhabditis elegans Major Sperm Protein family member (msp-65) (msp-65) mRNA, complete cds. A 
SNAP00000019951 ENSEMBL cdna:SNAP chromosome:CEL140:II:5156681:5157064:-1 None
NM_062500 NCBI Caenorhabditis elegans Major Sperm Protein family member (msp-152) (msp-152) mRNA, complete cds. A 
SNAP00000041369 ENSEMBL cdna:SNAP chromosome:CEL140:II:5809912:5810295:-1 None
GENEFINDER00000006023 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5297951:5298334:1 None
SNAP00000021329 ENSEMBL cdna:SNAP chromosome:CEL140:II:5199777:5200160:1 None
F26G1.7 ENSEMBL cdna:known chromosome:CEL140:II:4785885:4786268:-1 gene:F26G1.7 A 
SNAP00000034943 ENSEMBL cdna:SNAP chromosome:CEL140:II:4933012:4933395:1 None
C33F10.9 ENSEMBL cdna:known chromosome:CEL140:II:4825401:4825784:1 gene:C33F10.9 A 
SNAP00000005864 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10143328:10143711:-1 None
F58A6.8 ENSEMBL cdna:known chromosome:CEL140:II:5156609:5157064:-1 gene:F58A6.8 A 
SNAP00000043868 ENSEMBL cdna:SNAP chromosome:CEL140:II:4892297:4892680:-1 None
GENEFINDER00000041543 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9894603:9894986:1 None
NM_062571 NCBI Caenorhabditis elegans Major Sperm Protein family member (msp-50) (msp-50) mRNA, complete cds. A 
NM_068313 NCBI Caenorhabditis elegans Major Sperm Protein family member (msp-53) (msp-53) mRNA, complete cds. A 
GENEFINDER00000034137 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5249417:5249809:1 None
SNAP00000004243 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9836008:9836391:-1 None
SNAP00000000807 ENSEMBL cdna:SNAP chromosome:CEL140:II:4785885:4786268:-1 None
ZK354.5 ENSEMBL cdna:known chromosome:CEL140:IV:5294946:5295329:-1 gene:ZK354.5 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_062487 2/11 Cross Hyb Matching Probes A 
NM_069433 3/11 Cross Hyb Matching Probes A 
NM_062497 4/11 Cross Hyb Matching Probes A 
NM_069448 3/11 Cross Hyb Matching Probes A 
NM_062558 3/11 Cross Hyb Matching Probes A 
NM_062559 2/11 Cross Hyb Matching Probes A 
NM_062569 2/11 Cross Hyb Matching Probes A 
NM_062505 1/11 Cross Hyb Matching Probes A 
NM_062490 3/11 Cross Hyb Matching Probes A 
NM_062742 1/11 Cross Hyb Matching Probes A 
NM_062743 2/11 Cross Hyb Matching Probes A 
NM_062748 2/11 Cross Hyb Matching Probes A 
NM_062753 2/11 Cross Hyb Matching Probes A 
NM_069321 2/11 Cross Hyb Matching Probes A 
NM_069341 2/11 Cross Hyb Matching Probes A 
NM_069359 4/11 Cross Hyb Matching Probes A 
NM_069361 4/11 Cross Hyb Matching Probes A 
NM_062457 2/11 Cross Hyb Matching Probes A 
NM_062764 1/11 Cross Hyb Matching Probes A 
NM_062464 2/11 Cross Hyb Matching Probes A 
SNAP00000024816 3/11 Cross Hyb Matching Probes None
GENEFINDER00000024829 3/11 Cross Hyb Matching Probes None
SNAP00000000808 1/11 Cross Hyb Matching Probes None
GENEFINDER00000000824 1/11 Cross Hyb Matching Probes None
SNAP00000007649 2/11 Cross Hyb Matching Probes None
GENEFINDER00000007652 2/11 Cross Hyb Matching Probes None
GENEFINDER00000009155 1/11 Cross Hyb Matching Probes None
GENEFINDER00000019958 3/11 Cross Hyb Matching Probes None
GENEFINDER00000021346 2/11 Cross Hyb Matching Probes None
SNAP00000031244 1/11 Cross Hyb Matching Probes None
SNAP00000031245 2/11 Cross Hyb Matching Probes None
GENEFINDER00000031253 1/11 Cross Hyb Matching Probes None
GENEFINDER00000031258 2/11 Cross Hyb Matching Probes None
SNAP00000034948 1/11 Cross Hyb Matching Probes None
GENEFINDER00000034965 1/11 Cross Hyb Matching Probes None