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[171866_x_at]

Description CEC013_rc /REP_DB=TREMBL Accession /GB=C08013 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk173c11 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 94      6grp_high1_10_10 > 59      4grp_highest_8_8 > 29      4grp_high_8_8 > 07      6grp_highest_nonorm > 72      6grp_total > 47      4grp_total > 07      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 305
1 2 3 4 range
A 373.8
(2.7)
P 		219.5
(-3)
P 		321.5
(0.8)
P 		382.3
(3)
P 		163
B 340.6
(-1.4)
P 		274.3
(-3)
P 		404.3
(0.1)
P 		524
(3)
P 		250
C 368.6
(1.4)
P 		247.2
(-3)
P 		408.6
(2.9)
P 		411
(3)
P 		164
avr 361
(0.6) 		247
(-3) 		378.1
(1.1) 		439.1
(3) 		192

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 219
1 2 3 4 5 6 range
A 467.8
(3)
P 		357.2
(-1.7)
P 		422.4
(1.1)
P 		336.5
(-2.5)
P 		448.9
(2.2)
P 		325.6
(-3)
P 		142
B 390.2
(1)
P 		418.6
(2.2)
P 		323.1
(-1.8)
P 		436.9
(3)
P 		293.6
(-3)
P 		396.8
(1.3)
P 		143
C 320.5
(-2.2)
P 		410.3
(0.3)
P 		289.8
(-3)
P 		342.4
(-1.6)
P 		353.9
(-1.2)
P 		508.4
(3)
P 		219
avr 392.8
(1.4) 		395.4
(1.6) 		345.1
(-3) 		371.9
(-0.5) 		365.5
(-1.1) 		410.3
(3) 		65
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 95
1 2 3 4 range
A 136.1
(3)
P 		47.6
(-3)
P 		84
(-0.5)
P 		56
(-2.4)
P 		89
B 108.6
(2.6)
P 		67.8
(-3)
P 		93.7
(0.5)
P 		111.7
(3)
P 		44
C 122
(1.3)
P 		71.1
(-2.9)
P 		142.4
(3)
P 		69.3
(-3)
P 		73
avr 122.2
(3) 		62.2
(-3) 		106.7
(1.5) 		79
(-1.3) 		60

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 101
1 2 3 4 5 6 range
A 86.2
(-2.3)
P 		127
(2.1)
P 		92
(-1.6)
P 		85.3
(-2.4)
P 		135.5
(3)
P 		79.3
(-3)
P 		56
B 135.8
(1.9)
P 		139.3
(2.2)
P 		78.5
(-3)
P 		115.7
(0.2)
P 		119.3
(0.5)
P 		148
(3)
P 		70
C 118.8
(-0)
P 		125.2
(0.3)
P 		73.8
(-2.7)
P 		68.8
(-3)
P 		114.5
(-0.3)
P 		170.2
(3)
P 		101
avr 113.6
(0.8) 		130.5
(2.8) 		81.4
(-3) 		89.9
(-2) 		123.1
(1.9) 		132.5
(3) 		51
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171866_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27800
Sequence Type Exemplar sequence
Representative Public ID CEC013 NCBI
Target Description CEC013_rc /REP_DB=TREMBL Accession /GB=C08013 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk173c11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171839, NM_170895, NM_170894
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000023823 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7032191:7036907:1 None
NM_170894 NCBI Caenorhabditis elegans F15C11.2a (F15C11.2) mRNA, complete cds. A 
SNAP00000023819 ENSEMBL cdna:SNAP chromosome:CEL140:I:7035958:7036907:1 None
NM_170895 NCBI Caenorhabditis elegans F15C11.2c (F15C11.2) mRNA, complete cds. None
NM_171839 NCBI Caenorhabditis elegans F15C11.2b (F15C11.2) mRNA, complete cds. A 
F15C11.2a.2 ENSEMBL cdna:known chromosome:CEL140:I:7030112:7037192:1 gene:F15C11.2 None
F15C11.2c ENSEMBL cdna:known chromosome:CEL140:I:7030114:7037186:1 gene:F15C11.2 A 
F15C11.2b ENSEMBL cdna:known chromosome:CEL140:I:7030114:7036907:1 gene:F15C11.2 A 
F15C11.2a.1 ENSEMBL cdna:known chromosome:CEL140:I:7030114:7037208:1 gene:F15C11.2 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7036773-7037033(+) 72.52 72.52
Public Domain and Genome References
Ensembl F15C11.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA95799 Hypothetical protein F15C11.2a [Caenorhabditis elegans] emb|CAB10932.1| Hypothetical protein F15C11.2a [Caenorhabditis elegans] ref|NP_740883.1| F15C11.2a [Caenorhabditis elegans] 0.0
blast CAD44115 Hypothetical protein F15C11.2b [Caenorhabditis elegans] emb|CAD44155.1| Hypothetical protein F15C11.2b [Caenorhabditis elegans] ref|NP_740884.1| F15C11.2b [Caenorhabditis elegans] 0.0
blast CAD44116 Hypothetical protein F15C11.2c [Caenorhabditis elegans] emb|CAD44156.1| Hypothetical protein F15C11.2c [Caenorhabditis elegans] ref|NP_740885.1| F15C11.2c [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000626 EMBL-EBI Ubiquitin 1.3E-18
Pfam IPR000449 EMBL-EBI Ubiquitin-associated domain 4.7E-8
Pfam IPR000449 EMBL-EBI Ubiquitin-associated domain 4.7E-8
Pfam IPR000449 EMBL-EBI Ubiquitin-associated domain 4.7E-8
Pfam IPR000449 EMBL-EBI Ubiquitin-associated domain 4.7E-8
Sequence
Target Sequence 
>C. ELEGANS:171866_X_AT
cgctgtccgcaacgttcggagatttcnaacgcggctgtcgaacgtcttctcaactcttcc
atagatcnccnaattgccacacatacctatttcccacaaacacaaccttccgcggattcn
nnnnnnnnnnnnnnnnnnnnngtaaacttaacttgggctgtgatcttgcttctcgcctat
ccccannnnnnnnnnnnnnnnnnnnnnnctnaaatgtgtgcaactagtatattcgttctt
ctagtatcaccc

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGCTGTCCGCAACGTTCGGAGATTT 288 255 25 Antisense
GCTGTCCGCAACGTTCGGAGATTTC 132 293 26 Antisense
GTAAACTTAACTTGGGCTGTGATCT 491 461 166 Antisense
AAACTTAACTTGGGCTGTGATCTTG 47 127 168 Antisense
ACTTAACTTGGGCTGTGATCTTGCT 135 103 170 Antisense
TTAACTTGGGCTGTGATCTTGCTTC 9 685 172 Antisense
TAACTTGGGCTGTGATCTTGCTTCT 412 639 173 Antisense
AAATGTGTGCAACTAGTATATTCGT 234 121 236 Antisense
GTGCAACTAGTATATTCGTTCTTCT 135 479 242 Antisense
GTATATTCGTTCTTCTAGTATCACC 260 453 251 Antisense
TATATTCGTTCTTCTAGTATCACCC 64 663 252 Antisense
Sequence Source Affymetrix Proprietary Database