[Home] | [Total List]

[171865_x_at]

Description CEC2923_rc /REP_DB=TREMBL Accession /GB=C10292 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk135h6 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 91      4grp_high_8_8 > 08      6grp_total > 93      4grp_total > 22      6grp_high1_sub > 05      6grp_total_sub > Hat      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 154
1 2 3 4 range
A 206.1
(3)
P 		123.5
(-3)
A 		168.5
(0.3)
P 		156.5
(-0.6)
P 		83
B 234.9
(2.9)
P 		163.8
(0.1)
M 		83.1
(-3)
M 		237
(3)
M 		154
C 193
(0.6)
P 		148.9
(-2.9)
P 		147.5
(-3)
P 		223
(3)
P 		76
avr 211.3
(3) 		145.4
(-2) 		133
(-3) 		205.5
(2.6) 		78

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 173
1 2 3 4 5 6 range
A 210.3
(-3)
P 		256.4
(-0.9)
P 		268.5
(-0.4)
M 		278
(0)
M 		345
(3)
P 		219.9
(-2.6)
M 		135
B 245
(-1.8)
P 		261.5
(-1)
P 		239.5
(-2)
P 		260.8
(-1)
P 		347.4
(3)
P 		218.9
(-3)
M 		129
C 287.9
(-1.2)
P 		248.6
(-2.9)
P 		259.7
(-2.4)
P 		305.6
(-0.4)
P 		383.7
(3)
P 		246.8
(-3)
P 		137
avr 247.7
(-2.1) 		255.5
(-1.8) 		255.9
(-1.7) 		281.5
(-0.6) 		358.7
(3) 		228.5
(-3) 		130
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 75
(3)
P 		26.8
(-2.6)
A 		44.1
(-0.6)
P 		22.9
(-3)
P 		52
B 74.9
(3)
P 		40.5
(-0.7)
M 		19.3
(-3)
M 		50.5
(0.4)
M 		56
C 63.9
(3)
P 		42.8
(-1.8)
P 		51.4
(0.1)
P 		37.6
(-3)
P 		26
avr 71.3
(3) 		36.7
(-3) 		38.3
(-2.7) 		37
(-2.9) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 102
1 2 3 4 5 6 range
A 38.8
(-3)
P 		91.2
(1.8)
P 		58.5
(-1.2)
M 		70.5
(-0.1)
M 		104.1
(3)
P 		53.5
(-1.6)
M 		65
B 85.2
(-1)
P 		87
(-0.9)
P 		58.2
(-3)
P 		69.1
(-2.2)
P 		141.2
(3)
P 		81.6
(-1.3)
M 		83
C 106.7
(1.3)
P 		75.9
(-1.6)
P 		66.1
(-2.6)
P 		61.5
(-3)
P 		124.1
(3)
P 		82.6
(-1)
P 		63
avr 76.9
(-1.5) 		84.7
(-0.7) 		60.9
(-3) 		67
(-2.4) 		123.1
(3) 		72.6
(-1.9) 		62
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171865_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27721
Sequence Type Exemplar sequence
Representative Public ID CEC2923 NCBI
Target Description CEC2923_rc /REP_DB=TREMBL Accession /GB=C10292 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk135h6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) CEC2923
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
CEC2923 CEC2923_rc /REP_DB=TREMBL Accession /GB=C10292 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk135h6 : 3prime end, single read. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_062589 3/11 Cross Hyb Matching Probes A 
NM_182198 2/11 Cross Hyb Matching Probes A 
NM_062590 2/11 Cross Hyb Matching Probes A 
NM_182197 2/11 Cross Hyb Matching Probes A 
SNAP00000008531 2/11 Cross Hyb Matching Probes None
GENEFINDER00000008558 2/11 Cross Hyb Matching Probes None
ZK622.3a.3 3/11 Cross Hyb Matching Probes None
ZK622.3a.2 3/11 Cross Hyb Matching Probes A 
ZK622.3a.1 3/11 Cross Hyb Matching Probes A 
ZK622.3d.3 2/11 Cross Hyb Matching Probes A 
ZK622.3c.2 2/11 Cross Hyb Matching Probes A 
ZK622.3c.1 2/11 Cross Hyb Matching Probes A 
ZK622.3d.4 2/11 Cross Hyb Matching Probes A 
ZK622.3d.1 2/11 Cross Hyb Matching Probes A 
ZK622.3b 2/11 Cross Hyb Matching Probes A 
ZK622.3d.2 2/11 Cross Hyb Matching Probes A 
ZK622.3c.5 2/11 Cross Hyb Matching Probes A 
ZK622.3c.3 2/11 Cross Hyb Matching Probes A 
ZK622.3d.7 2/11 Cross Hyb Matching Probes None
ZK622.3c.4 2/11 Cross Hyb Matching Probes A 
ZK622.3d.8 2/11 Cross Hyb Matching Probes None
ZK622.3d.5 2/11 Cross Hyb Matching Probes A 
ZK622.3d.6 2/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Sequence
Target Sequence 
>C. ELEGANS:171865_X_AT
ggaggttcggacaatacttccaaggatgcacgaacacctgagagatgagaaagttattcg
taagaactgggtacttcttgagttgactcattagattgtgaatatatcttatttctccac
tggatggagctgtacacgta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGGTTCGGACAATACTTCCAAGG 83 515 20 Antisense
CGGACAATACTTCCAAGGATGCACG 693 241 27 Antisense
ACTTCCAAGGATGCACGAACACCTG 71 103 35 Antisense
GGATGCACGAACACCTGAGAGATGA 709 513 43 Antisense
GCACGAACACCTGAGAGATGAGAAA 334 315 47 Antisense
TTATTCGTAAGAACTGGGTACTTCT 339 671 73 Antisense
ACTGGGTACTTCTTGAGTTGACTCA 148 95 85 Antisense
GAGTTGACTCATTAGATTGTGAATA 405 397 99 Antisense
GTGAATATATCTTATTTCTCCACTG 623 481 117 Antisense
ATATCTTATTTCTCCACTGGATGGA 204 21 123 Antisense
TCCACTGGATGGAGCTGTACACGTA 418 589 135 Antisense
Sequence Source Affymetrix Proprietary Database