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[171864_x_at]

Description CEC2803_rc /REP_DB=TREMBL Accession /GB=C10280 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk135a3 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 08      6grp_total > 19      4grp_total > 41      6grp_cgc > 01      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 161
1 2 3 4 range
A 140.1
(-3)
P 		178.6
(-1.4)
P 		281.8
(3)
P 		159.9
(-2.2)
A 		142
B 139
(-3)
A 		182.1
(-0.1)
P 		227.7
(3)
P 		150.3
(-2.2)
A 		89
C 150.7
(-3)
A 		300.4
(3)
P 		155.8
(-2.8)
A 		194.8
(-1.2)
M 		150
avr 143.3
(-3) 		220.4
(2.9) 		221.8
(3) 		168.3
(-1.1) 		79

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 165
1 2 3 4 5 6 range
A 260.5
(3)
P 		123.5
(-2)
P 		95.3
(-3)
P 		125.6
(-1.9)
M 		182.2
(0.2)
P 		168.3
(-0.3)
A 		165
B 176.3
(3)
P 		162.5
(1.8)
A 		156
(1.3)
A 		134.5
(-0.5)
P 		161.7
(1.8)
P 		104.8
(-3)
A 		72
C 208.2
(3)
M 		138.4
(-0.8)
P 		186.9
(1.8)
P 		159.9
(0.4)
A 		137.9
(-0.9)
P 		98.7
(-3)
P 		110
avr 215
(3) 		141.5
(-1.8) 		146.1
(-1.5) 		140
(-1.9) 		160.6
(-0.6) 		123.9
(-3) 		91
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 51
(0.3)
P 		38.8
(-1.2)
P 		73.7
(3)
P 		23.4
(-3)
A 		50
B 44.3
(0.5)
A 		45
(0.8)
P 		52.8
(3)
P 		32
(-3)
A 		21
C 49.9
(-1.1)
A 		86.4
(3)
P 		54.3
(-0.6)
A 		32.9
(-3)
M 		54
avr 48.4
(0.7) 		56.7
(2.3) 		60.3
(3) 		29.4
(-3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 48
(1.8)
P 		43.9
(1.1)
P 		20.8
(-3)
P 		31.8
(-1.1)
M 		55
(3)
P 		41
(0.5)
A 		34
B 61.3
(2.1)
P 		54.1
(0.7)
A 		37.9
(-2.5)
A 		35.6
(-3)
P 		65.7
(3)
P 		39.1
(-2.3)
A 		30
C 77.2
(3)
M 		42.2
(-1.7)
P 		47.6
(-0.9)
P 		32.2
(-3)
A 		44.6
(-1.3)
P 		33
(-2.9)
P 		45
avr 62.2
(3) 		46.7
(-0.2) 		35.4
(-2.5) 		33.2
(-3) 		55.1
(1.5) 		37.7
(-2.1) 		29
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171864_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27611
Sequence Type Exemplar sequence
Representative Public ID CEC2803 NCBI
Target Description CEC2803_rc /REP_DB=TREMBL Accession /GB=C10280 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk135a3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) CEC2803
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
CEC2803 CEC2803_rc /REP_DB=TREMBL Accession /GB=C10280 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk135a3 : 3prime end, single read. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_070411 2/11 Cross Hyb Matching Probes A 
SNAP00000001440 2/11 Cross Hyb Matching Probes None
GENEFINDER00000001466 2/11 Cross Hyb Matching Probes None
Y41E3.4.2 1/11 Cross Hyb Matching Probes None
Y41E3.4.1 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Sequence
Target Sequence 
>C. ELEGANS:171864_X_AT
atccagattcattgacagttgtctccaatgctctaattgatcagtctatttcccacaatc
cacagctttatgatagatncccaattccgaacccatcggattcctttctgtgcgcgatcg
tgattncgacgtcttccaccgttggtcttgcacccgaactgtcatgctgaaagacggagg
agcttnctggaaagaattgatcataacgtaact

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCCAGATTCATTGACAGTTGTCTC 635 39 70 Antisense
GACAGTTGTCTCCAATGCTCTAATT 350 369 83 Antisense
GTCTCCAATGCTCTAATTGATCAGT 382 471 90 Antisense
TTGATCAGTCTATTTCCCACAATCC 460 705 106 Antisense
TTTCCCACAATCCACAGCTTTATGA 524 669 118 Antisense
CACAATCCACAGCTTTATGATAGAT 561 193 123 Antisense
CCAATTCCGAACCCATCGGATTCCT 242 275 150 Antisense
TCCGAACCCATCGGATTCCTTTCTG 315 595 155 Antisense
CTTGCACCCGAACTGTCATGCTGAA 279 219 216 Antisense
GTCATGCTGAAAGACGGAGGAGCTT 19 467 230 Antisense
GGAAAGAATTGATCATAACGTAACT 364 527 258 Antisense
Sequence Source Affymetrix Proprietary Database