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[171861_x_at]

Description C32853_rc /REP_DB=TREMBL Accession /GB=C32853 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk336b11 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 50      6grp_high1_10_10 > 06      4grp_highest_8_8 > 62      4grp_high_8_8 > 18      6grp_highest_nonorm > 30      6grp_total > 06      4grp_total > 29      6grp_highest_sub > De      6grp_total_sub > Decrease      6grp_cgc > 22      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 367
1 2 3 4 range
A 1006.2
(2.5)
P 		1035.3
(3)
P 		686.5
(-3)
P 		993.3
(2.3)
P 		349
B 1053.8
(3)
P 		856.2
(-1.3)
P 		781.1
(-3)
P 		885
(-0.7)
P 		273
C 954.5
(3)
P 		724.4
(-2.2)
P 		689.2
(-3)
P 		863.7
(0.9)
P 		265
avr 1004.8
(3) 		872
(0.2) 		718.9
(-3) 		914
(1.1) 		286

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1135
1 2 3 4 5 6 range
A 1507.9
(3)
P 		1081.1
(0.2)
P 		711
(-2.2)
P 		580.8
(-3)
P 		709.4
(-2.2)
P 		694.6
(-2.3)
P 		927
B 1380.3
(3)
P 		985.8
(0.6)
P 		673.4
(-1.3)
P 		669.9
(-1.3)
P 		535.4
(-2.1)
P 		392.7
(-3)
P 		988
C 1249.1
(3)
P 		982.3
(1.2)
P 		757.6
(-0.4)
P 		683.3
(-0.9)
P 		648.7
(-1.1)
P 		373.2
(-3)
P 		876
avr 1379.1
(3) 		1016.4
(0.6) 		714
(-1.5) 		644.7
(-1.9) 		631.2
(-2) 		486.8
(-3) 		892
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 221
1 2 3 4 range
A 366.4
(3)
P 		224.7
(-0.8)
P 		179.5
(-2.1)
P 		145.4
(-3)
P 		221
B 336
(3)
P 		211.5
(-1.8)
P 		181
(-3)
P 		188.6
(-2.7)
P 		155
C 316
(3)
P 		208.3
(-0.8)
P 		240.2
(0.3)
P 		145.6
(-3)
P 		170
avr 339.5
(3) 		214.8
(-1.2) 		200.2
(-1.7) 		159.9
(-3) 		180

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 355
1 2 3 4 5 6 range
A 278
(0.3)
P 		384.5
(3)
P 		154.8
(-2.8)
P 		147.3
(-3)
P 		214.1
(-1.3)
P 		169.1
(-2.4)
P 		237
B 480.3
(3)
P 		328.1
(0.3)
P 		163.5
(-2.7)
P 		177.4
(-2.4)
P 		217.5
(-1.7)
P 		146.4
(-3)
P 		334
C 463
(3)
P 		299.7
(0.1)
P 		192.8
(-1.8)
P 		137.4
(-2.8)
P 		209.9
(-1.5)
P 		124.9
(-3)
P 		338
avr 407.1
(3) 		337.4
(1.4) 		170.4
(-2.5) 		154
(-2.8) 		213.8
(-1.5) 		146.8
(-3) 		260
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171861_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27849
Sequence Type Exemplar sequence
Representative Public ID C32853 NCBI
Target Description C32853_rc /REP_DB=TREMBL Accession /GB=C32853 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk336b11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) C32853
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C32853 C32853_rc /REP_DB=TREMBL Accession /GB=C32853 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk336b11 : 3prime end, single read. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_067928 7/11 Cross Hyb Matching Probes None
F42A6.9 7/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Sequence
Target Sequence 
>C. ELEGANS:171861_X_AT
ctggaaattgtttaggattgtttggaattttccgnaatttcccagnnnnnnnncanattt
gttcanttannnnnnnnnnggnnnnnntttcacatccaatggcacacaaacccttttgca

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTGGAAATTGTTTAGGATTGTTTGG 641 239 13 Antisense
GAAATTGTTTAGGATTGTTTGGAAT 683 363 16 Antisense
TTTCACATCCAATGGCACACAAACC 439 673 100 Antisense
TTCACATCCAATGGCACACAAACCC 587 685 101 Antisense
TCACATCCAATGGCACACAAACCCT 527 625 102 Antisense
CACATCCAATGGCACACAAACCCTT 355 195 103 Antisense
ACATCCAATGGCACACAAACCCTTT 11 107 104 Antisense
CATCCAATGGCACACAAACCCTTTT 645 201 105 Antisense
ATCCAATGGCACACAAACCCTTTTG 97 39 106 Antisense
TCCAATGGCACACAAACCCTTTTGC 466 587 107 Antisense
CCAATGGCACACAAACCCTTTTGCA 378 265 108 Antisense
Sequence Source Affymetrix Proprietary Database