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[171859_x_at]

Description CEC498_rc /REP_DB=TREMBL Accession /GB=C07498 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk140h10 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 30      6grp_high1_10_10 > 04      4grp_highest_8_8 > 27      4grp_high_8_8 > 56      6grp_highest_nonorm > 04      6grp_total > 05      4grp_total > 63      6grp_highest_sub > De      6grp_cgc > 42      6grp_high1_sub > De      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3450
1 2 3 4 range
A 7164.3
(3)
P 		4007.9
(-3)
P 		6360.6
(1.5)
P 		4251.8
(-2.5)
P 		3156
B 5722.4
(-0.6)
P 		4933
(-3)
P 		5693
(-0.7)
P 		6900.9
(3)
P 		1968
C 5833.6
(-2.8)
P 		7060.7
(1.6)
P 		7457.4
(3)
P 		5787.9
(-3)
P 		1670
avr 6240.1
(1.6) 		5333.9
(-3) 		6503.7
(3) 		5646.9
(-1.4) 		1170

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5429
1 2 3 4 5 6 range
A 4496.4
(1.6)
P 		3572.2
(-0.4)
P 		4780
(2.2)
P 		3050.5
(-1.5)
P 		5146.9
(3)
P 		2352.9
(-3)
P 		2794
B 7781.6
(3)
P 		7116
(1.8)
P 		7137.3
(1.8)
P 		4495.8
(-3)
P 		6062.2
(-0.1)
P 		4765.6
(-2.5)
P 		3286
C 4871.9
(0.9)
P 		6207.7
(3)
P 		4094.9
(-0.3)
P 		2385.1
(-3)
P 		4601.5
(0.5)
P 		3901
(-0.6)
P 		3823
avr 5716.6
(3) 		5632
(2.8) 		5337.4
(2.1) 		3310.5
(-3) 		5270.2
(1.9) 		3673.2
(-2.1) 		2406
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1986
1 2 3 4 range
A 2608.5
(3)
P 		870
(-2.3)
P 		1662.8
(0.1)
P 		622.4
(-3)
P 		1986
B 1824.8
(3)
P 		1218.3
(-3)
P 		1319.2
(-2)
P 		1470.6
(-0.5)
P 		607
C 1931.1
(0.5)
P 		2030
(0.9)
P 		2599.1
(3)
P 		975.9
(-3)
P 		1623
avr 2121.5
(3) 		1372.8
(-1.1) 		1860.4
(1.6) 		1023
(-3) 		1099

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2228
1 2 3 4 5 6 range
A 828.9
(-1.4)
P 		1270.4
(1.3)
P 		1041
(-0.1)
P 		773.7
(-1.8)
P 		1553.1
(3)
P 		572.8
(-3)
P 		980
B 2707.6
(3)
P 		2368.6
(1.7)
P 		1733.1
(-0.9)
P 		1190.8
(-3)
P 		2463
(2)
P 		1777.1
(-0.7)
P 		1517
C 1805.8
(2.6)
P 		1894.2
(3)
P 		1042.2
(-0.6)
P 		479.6
(-3)
P 		1489
(1.3)
P 		1305.9
(0.5)
P 		1415
avr 1780.8
(2.6) 		1844.4
(3) 		1272.1
(-0.3) 		814.7
(-3) 		1835
(2.9) 		1218.6
(-0.6) 		1030
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171859_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27838
Sequence Type Exemplar sequence
Representative Public ID CEC498 NCBI
Target Description CEC498_rc /REP_DB=TREMBL Accession /GB=C07498 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk140h10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063292, NM_182153, NM_001027149
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
T05H10.6a.2 ENSEMBL cdna:known chromosome:CEL140:II:8066369:8067726:1 gene:T05H10.6 None
NM_001027149 NCBI Caenorhabditis elegans Ubiquitin Fusion Degradation (yeast UFD homolog) family member (ufd-2) (ufd-2) mRNA, complete cds. None
SNAP00000019967 ENSEMBL cdna:SNAP chromosome:CEL140:II:8066403:8067726:1 None
NM_182153 NCBI Caenorhabditis elegans T05H10.6b (T05H10.6) mRNA, complete cds. A 
GENEFINDER00000019971 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8066403:8067726:1 None
T05H10.5c ENSEMBL cdna:known chromosome:CEL140:II:8062664:8068029:1 gene:T05H10.5 A 
NM_063292 NCBI Caenorhabditis elegans T05H10.6a (T05H10.6) mRNA, complete cds. A 
T05H10.6a.3 ENSEMBL cdna:known chromosome:CEL140:II:8066365:8067726:1 gene:T05H10.6 None
T05H10.6b.2 ENSEMBL cdna:known chromosome:CEL140:II:8066208:8067996:1 gene:T05H10.6 A 
T05H10.6a.1 ENSEMBL cdna:known chromosome:CEL140:II:8066366:8067726:1 gene:T05H10.6 None
T05H10.6b.1 ENSEMBL cdna:known chromosome:CEL140:II:8066208:8068105:1 gene:T05H10.6 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8067498-8067838(+) 89.44 89.44
Public Domain and Genome References
Ensembl T05H10.5
T05H10.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD59156 Hypothetical protein T05H10.6b [Caenorhabditis elegans] ref|NP_871953.1| T05H10.6b [Caenorhabditis elegans] 0.0
blast CAA87793 Hypothetical protein T05H10.6a [Caenorhabditis elegans] ref|NP_495693.1| T05H10.6a [Caenorhabditis elegans] sp|P52899|ODPA_CAEEL Probable pyruvate dehydrogenase E1 component alpha subunit, mitochondrial precursor (PDHE1-A) 0.0
blast CAE67764 Hypothetical protein CBG13339 [Caenorhabditis briggsae] 0.0
blast CAH04720 Hypothetical protein T05H10.5c [Caenorhabditis elegans] ref|NP_001022320.1| Ubiquitin Fusion Degradation (yeast UFD homolog) family member (ufd-2) [Caenorhabditis elegans] 0.0
blast CAA87792 Hypothetical protein T05H10.5a [Caenorhabditis elegans] ref|NP_495692.1| Ubiquitin Fusion Degradation (yeast UFD homolog) family member (ufd-2) [Caenorhabditis elegans] sp|Q09349|UBE4_CAEEL Probable ubiquitin conjugation factor E4 0.0
blast CAC70105 Hypothetical protein T05H10.5b [Caenorhabditis elegans] ref|NP_495691.1| Ubiquitin Fusion Degradation (yeast UFD homolog) family member (ufd-2) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001017 EMBL-EBI Dehydrogenase, E1 component 1.0E-126
Pfam IPR001017 EMBL-EBI Dehydrogenase, E1 component 1.0E-126
Pfam IPR003613 EMBL-EBI Zn-finger, modified RING 2.1E-56
Sequence
Target Sequence 
>C. ELEGANS:171859_X_AT
ggagttggatgaagcgtggaagagtgctacattcaggcggtgttctcccaccagaagctc
tctacgccgatatttatcacaacaccccagctcaagagattcgcggagccactattgatg
aaactatcgtccagccattcaaaactcctgctgatgtactgaagtctattgggagagctt
aaacgacacgaattttctatgcaacattg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGTTGGATGAAGCGTGGAAGAGT 447 517 16 Antisense
AGAGTGCTACATTCAGGCGGTGTTC 76 67 36 Antisense
GAAGCTCTCTACGCCGATATTTATC 342 343 69 Antisense
CGCCGATATTTATCACAACACCCCA 354 255 80 Antisense
AACACCCCAGCTCAAGAGATTCGCG 2 137 96 Antisense
GAGATTCGCGGAGCCACTATTGATG 115 397 111 Antisense
TGATGAAACTATCGTCCAGCCATTC 253 567 131 Antisense
TCGTCCAGCCATTCAAAACTCCTGC 380 605 142 Antisense
AACTCCTGCTGATGTACTGAAGTCT 281 141 158 Antisense
ATTGGGAGAGCTTAAACGACACGAA 248 3 183 Antisense
GACACGAATTTTCTATGCAACATTG 592 365 200 Antisense
Sequence Source Affymetrix Proprietary Database